EnhancerDB
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  3. rs79884579[chr19:2490005]
Enhancers that have rs79884579[chr19:2490005]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2481141 2509475 enh4958
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs79884579[chr19:2490005]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2487107 2490254 TCF7L2 GTRD no Colon (HCT116) 108360382
chr19 2487763 2490018 TCF7L2 GTRD no Colon (HCT116) 108360385
chr19 2487990 2490105 ZNF274 GTRD no Blood (GM12878) 108360388
chr19 2488602 2490089 ZNF143 GTRD no Epithelial (MCF-7) 21835501
chr19 2488602 2490089 ZNF143 GTRD no Epithelial (MCF-7) 108360391
chr19 2488665 2490101 ZBTB33 GTRD no Lung (A549) 108360392
chr19 2488740 2490112 ZNF274 GTRD no Cervix (HeLa-S3) 21835502
chr19 2488740 2490112 ZNF274 GTRD no Cervix (HeLa-S3) 108360394
chr19 2489202 2490236 ZBTB33 GTRD no Lung (A549) 108360417
chr19 2489240 2490017 ZNF143 GTRD no Epithelial (MCF-7) 21835523
chr19 2489240 2490017 ZNF143 GTRD no Epithelial (MCF-7) 108360428
chr19 2489255 2490129 ZNF143 GTRD no Epithelial (MCF-7) 21835524
chr19 2489255 2490129 ZNF143 GTRD no Epithelial (MCF-7) 108360429
chr19 2489339 2490168 ZNF274 GTRD no Blood (GM12878) 108360447
chr19 2489503 2490095 ZNF274 GTRD no Bone Marrow (K562) 21835540
chr19 2489516 2490040 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21835541
chr19 2489991 2490011 TP63 JASPAR yes 112065685
chr19 2489992 2490010 TP73 JASPAR yes 112065686
chr19 2489993 2490008 TP53 JASPAR yes 112065687
chr19 2490000 2490010 FIGLA JASPAR yes 112065688
chr19 2490000 2490010 ID4 JASPAR yes 112065689
chr19 2490000 2490010 TCF3 JASPAR yes 112065690
chr19 2490000 2490010 TCF4 JASPAR yes 112065691
chr19 2490001 2490010 SNAI2 JASPAR yes 112065692
chr19 2490002 2490007 USF2 TRANSFAC yes 112065693
Genes associated with rs79884579[chr19:2490005], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More