EnhancerDB
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  3. rs79893731[chr1:54842255]
Enhancers that have rs79893731[chr1:54842255]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54820685 54854719 enh11867
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs79893731[chr1:54842255]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54841805 54842594 ZNF274 GTRD no Liver (HepG2) 107804902
chr1 54841992 54842676 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804903
chr1 54842036 54842556 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804904
chr1 54842038 54842654 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107804905
chr1 54842062 54842538 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804906
chr1 54842070 54842666 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804907
chr1 54842070 54842700 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804908
chr1 54842099 54842759 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804909
chr1 54842101 54842537 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804910
chr1 54842109 54842519 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804911
chr1 54842185 54842569 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804912
chr1 54842217 54842507 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804913
chr1 54842240 54842560 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804914
chr1 54842250 54842265 RUNX2 JASPAR yes 28979785
chr1 54842251 54842260 RUNX2 JASPAR yes 28979786
chr1 54842251 54842261 RUNX3 JASPAR yes 28979787
Genes associated with rs79893731[chr1:54842255], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 54497347 54519177 - TMEM59 ENSG00000116209.7 54519177 323078 Stomach 0.00242702 722