EnhancerDB
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  3. rs80195715[chr19:2550711]
Enhancers that have rs80195715[chr19:2550711]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs80195715[chr19:2550711]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2549894 2551536 TCF7L2 GTRD no Colon (HCT116) 21837099
chr19 2549894 2551536 TCF7L2 GTRD no Colon (HCT116) 108362410
chr19 2550042 2551338 TCF7L2 GTRD no Colon (HCT116) 21837100
chr19 2550042 2551338 TCF7L2 GTRD no Colon (HCT116) 108362411
chr19 2550074 2551502 TCF7L2 GTRD no Colon (HCT116) 21837101
chr19 2550074 2551502 TCF7L2 GTRD no Colon (HCT116) 108362412
chr19 2550704 2550716 TFAP2A JASPAR yes 112073412
chr19 2550704 2550716 TFAP2B JASPAR yes 112073413
chr19 2550704 2550716 TFAP2C JASPAR yes 112073414
chr19 2550704 2550719 TFAP2A JASPAR yes 112073415
chr19 2550705 2550714 TFAP2A JASPAR yes 112073416
chr19 2550706 2550715 TFAP2A JASPAR yes 112073417
Genes associated with rs80195715[chr19:2550711], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More