EnhancerDB
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  3. rs8053402[chr16:85578013]
Enhancers that have rs8053402[chr16:85578013]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85541745 85623813 enh16872
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs8053402[chr16:85578013]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85576150 85578432 ZNF274 GTRD no Bone Marrow (K562) 21728568
chr16 85576695 85579765 ZNF143 GTRD no Epithelial (MCF-7) 21728577
chr16 85576698 85578114 TCF7L2 GTRD no Colon (HCT116) 21728578
chr16 85576724 85578754 ZNF274 GTRD no Bone Marrow (K562) 21728579
chr16 85576780 85578554 TCF7L2 GTRD no Colon (HCT116) 21728584
chr16 85577328 85578715 TCF7L2 GTRD no Colon (HCT116) 21728586
chr16 85577742 85578031 TCF7L2 GTRD no Colon (HCT116) 21728588
chr16 85577743 85578133 ZNF274 GTRD no Bone Marrow (K562) 21728589
chr16 85577838 85578379 TCF7L2 GTRD no Colon (HCT116) 21728590
chr16 85577928 85578172 SOX2 GTRD no Neural Stem Cells (H9) 21728591
chr16 85578007 85578024 RARA JASPAR yes 12074468
chr16 85578007 85578024 RXRA JASPAR yes 12074469
Genes associated with rs8053402[chr16:85578013], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More