EnhancerDB
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  3. rs9442401[chr1:25049686]
Enhancers that have rs9442401[chr1:25049686]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs9442401[chr1:25049686]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25049674 25049689 MEF2A JASPAR yes 27523178
chr1 25049675 25049690 FOXP1 JASPAR yes 27523179
chr1 25049675 25049690 MEF2C JASPAR yes 27523180
chr1 25049675 25049696 IRF1 JASPAR yes 27523181
chr1 25049676 25049688 FOXC2 JASPAR yes 27523182
chr1 25049676 25049688 MEF2A JASPAR yes 27523183
chr1 25049676 25049688 MEF2B JASPAR yes 27523184
chr1 25049676 25049688 MEF2D JASPAR yes 27523185
chr1 25049677 25049687 MEF2A JASPAR yes 27523186
chr1 25049680 25049695 FOXA1 JASPAR yes 27523188
chr1 25049681 25049693 FOXI1 JASPAR yes 27523189
chr1 25049681 25049696 FOXP1 JASPAR yes 27523190
chr1 25049682 25049694 FOXC2 JASPAR yes 27523191
chr1 25049682 25049696 ONECUT2 JASPAR yes 27523192
chr1 25049682 25049696 ONECUT3 JASPAR yes 27523193
chr1 25049683 25049694 FOXB1 JASPAR yes 27523194
chr1 25049683 25049694 FOXC1 JASPAR yes 27523195
chr1 25049684 25049688 YY1 TRANSFAC yes 27523196
chr1 25049685 25049700 FOXP1 JASPAR yes 27523197
chr1 25049685 25049706 IRF1 JASPAR yes 27523198
chr1 25049686 25049698 FOXC2 JASPAR yes 27523199
Genes associated with rs9442401[chr1:25049686], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More