EnhancerDB
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  3. rs971888[chr1:151943278]
Enhancers that have rs971888[chr1:151943278]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 151932405 151955339 enh12260
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Thyroid Lung (PC-9) Kidney Muscle (Myotube) Neural Stem Cells (H9) Heart
chr1 151943125 151943453 vista3302
VISTA
Transcript factors that have rs971888[chr1:151943278]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 151941185 151943325 AR GTRD no Prostate (PC-3) 21338753
chr1 151941185 151943325 AR GTRD no Prostate (PC-3) 107830131
chr1 151941185 151943325 AR GTRD no Prostate (PC-3) 107830132
chr1 151942658 151943489 ZBTB33 GTRD no Brain (SK-N-SH) 107830142
chr1 151942768 151943432 ZBTB33 GTRD no Brain (SK-N-SH) 107830145
chr1 151942772 151943390 ZBTB33 GTRD no Brain (SK-N-SH) 107830146
chr1 151942816 151943426 ZBTB33 GTRD no Brain (SK-N-SH) 107830149
chr1 151943096 151943636 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107830151
chr1 151943166 151943476 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21338764
chr1 151943166 151943476 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107830152
chr1 151943211 151943350 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107830153
chr1 151943262 151943279 RARA JASPAR yes 32208315
chr1 151943262 151943279 RXRA JASPAR yes 32208316
chr1 151943262 151943279 RARA JASPAR yes 118369250
chr1 151943262 151943279 RXRA JASPAR yes 118369251
chr1 151943271 151943285 PLAG1 JASPAR yes 32208322
chr1 151943271 151943285 PLAG1 JASPAR yes 118369257
chr1 151943273 151943287 PLAG1 JASPAR yes 32208323
chr1 151943273 151943287 PLAG1 JASPAR yes 118369258
chr1 151943274 151943278 LFA1 TRANSFAC yes 32208324
chr1 151943274 151943278 LFA1 TRANSFAC yes 118369259
Genes associated with rs971888[chr1:151943278], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More