EnhancerDB
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  3. rs999353[chr1:27924677]
Enhancers that have rs999353[chr1:27924677]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27879543 27929405 enh11668
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs999353[chr1:27924677]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27924675 27924687 NHLH1 JASPAR yes 27714476
chr1 27924675 27924687 NHLH1 JASPAR yes 118258879
chr1 27924676 27924686 NHLH1 JASPAR yes 27714477
Genes associated with rs999353[chr1:27924677], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 28655513 28662476 + MED18 ENSG00000130772.9 28655513 730836 Adrenal 0.15799 411