EnhancerDB
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Enhancers that regulate SNX1[ENSG00000028528.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 64284405 64319135 enh3635 64386322 67187
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr15 64288096 64288290 vista20308 64386322 98032
VISTA
chr15 64301909 64302485 vista20309 64386322 83837
VISTA
chr15 64310077 64310418 vista20310 64386322 75904
VISTA
chr15 64322570 64326720 enh64863 64386322 59602
Heart
chr15 64334105 64338255 enh3636 64386322 48067
Blood (Karpas-422)
chr15 64340765 64345919 enh89755 64386322 40403
Prostate (RWPE1) Epithelial (MCF-7)
chr15 64357805 64361995 enh62480 64386322 24327
Esophagus Uterus Pancreas
chr15 64385169 64385477 vista20311 64386322 845
VISTA
chr15 64395589 64399795 enh16230 64386322 9267
Brain (SK-N-MC) Esophagus Liver Stomach Muscle (A673) Placenta Thyroid Muscle (Myotube) Heart
chr15 64397616 64397971 vista20312 64386322 11294
VISTA
chr15 64400425 64404575 enh101438 64386322 14103
Thyroid
chr15 64422572 64426722 enh64864 64386322 36250
Heart
chr15 64439705 64445935 enh3637 64386322 53383
Blood (Karpas-422)
chr15 64448085 64452855 enh3638 64386322 61763
Blood (Karpas-422)
chr15 64479645 64483795 enh75674 64386322 93323
Muscle (A673)
chr15 64484245 64492795 enh75675 64386322 97923
Muscle (A673) Liver (HepG2)
Transcript facotrs that regulate SNX1[ENSG00000028528.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 64385008 64385378 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 944 108145219
chr15 64385028 64385352 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 970 108145220
chr15 64385029 64385439 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 883 108145221
chr15 64385077 64386848 POLR2A UCSC Txn Factor no Conserved 64386322 526 108145222
chr15 64385145 64385435 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 64386322 887 108145223
chr15 64385156 64385436 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 64386322 886 108145224
chr15 64385159 64385599 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 723 108145225
chr15 64385167 64385487 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 835 108145226
chr15 64385178 64385709 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 613 108145227
chr15 64385180 64385580 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 742 108145228
chr15 64385181 64385617 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 705 108145229
chr15 64385184 64385544 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 778 108145230
chr15 64385185 64385188 MYB TRANSFAC yes 64386322 1134 70540231
chr15 64385185 64385200 HNF4G JASPAR yes 64386322 1122 70540232
chr15 64385188 64385669 CTCF UCSC Txn Factor no Conserved 64386322 653 108145231
chr15 64385189 64385195 LEF1 TRANSFAC yes 64386322 1127 70540233
chr15 64385189 64385195 SOX10 JASPAR yes 64386322 1127 70540234
chr15 64385192 64385206 SPIC JASPAR yes 64386322 1116 70540235
chr15 64385194 64385212 SRF JASPAR yes 64386322 1110 70540236
chr15 64385200 64385204 YY1 TRANSFAC yes 64386322 1118 70540237
chr15 64385204 64385534 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 788 108145232
chr15 64385205 64385216 CDX2 JASPAR yes 64386322 1106 70540238
chr15 64385207 64385217 HOXA13 JASPAR yes 64386322 1105 70540239
chr15 64385209 64385585 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 737 108145233
chr15 64385212 64385224 YY1 JASPAR yes 64386322 1098 70540240
chr15 64385215 64385221 YY1 JASPAR yes 64386322 1101 70540241
chr15 64385219 64385230 EBF1 JASPAR yes 64386322 1092 70540242
chr15 64385223 64385659 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 663 108145234
chr15 64385224 64385604 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 718 108145235
chr15 64385228 64385240 HNF1B JASPAR yes 64386322 1082 70540243
chr15 64385236 64385252 POU4F2 JASPAR yes 64386322 1070 70540244
chr15 64385236 64385252 POU4F3 JASPAR yes 64386322 1070 70540245
chr15 64385237 64385567 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 755 108145236
chr15 64385239 64385255 POU4F2 JASPAR yes 64386322 1067 70540246
chr15 64385239 64385255 POU4F3 JASPAR yes 64386322 1067 70540247
chr15 64385241 64385245 YY1 TRANSFAC yes 64386322 1077 70540248
chr15 64385241 64385255 POU4F1 JASPAR yes 64386322 1067 70540249
chr15 64385243 64385699 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 64386322 623 108145237
chr15 64385244 64385256 HNF1B JASPAR yes 64386322 1066 70540250
chr15 64385249 64385609 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 713 108145238
chr15 64385252 64385264 YY1 JASPAR yes 64386322 1058 70540251
chr15 64385255 64385631 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 64386322 691 108145239
chr15 64385267 64385287 RREB1 JASPAR yes 64386322 1035 70540252
chr15 64385268 64385632 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 690 108145240
chr15 64385288 64385303 FOXA1 JASPAR yes 64386322 1019 70540253
chr15 64385288 64385548 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 774 108145241
chr15 64385291 64385306 FOXA1 JASPAR yes 64386322 1016 70540254
chr15 64385302 64385522 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 800 108145242
chr15 64385305 64385565 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 757 108145243
chr15 64385305 64385762 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 560 108145244
chr15 64385309 64385539 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 64386322 783 108145245
chr15 64385311 64385561 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 64386322 761 108145246
chr15 64385313 64385489 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 833 108145247
chr15 64385314 64385558 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 764 108145248
chr15 64385314 64385584 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64386322 738 108145249
chr15 64385319 64385599 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 723 108145250
chr15 64385320 64385324 H1TF2 TRANSFAC yes 64386322 998 70540255
chr15 64385320 64385324 NFE TRANSFAC yes 64386322 998 70540256
chr15 64385320 64385324 SRF TRANSFAC yes 64386322 998 70540257
chr15 64385324 64385523 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 799 108145251
chr15 64385327 64385543 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 64386322 779 108145252
chr15 64385327 64385591 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 731 108145253
chr15 64385330 64385520 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 64386322 802 108145254
chr15 64385336 64385600 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 64386322 722 108145255
chr15 64385364 64385534 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64386322 788 108145256
chr15 64385367 64385372 GATA2 JASPAR yes 64386322 950 70540258
chr15 64385370 64385388 ESR1 JASPAR yes 64386322 934 70540259
chr15 64385372 64385387 ESR2 JASPAR yes 64386322 935 70540260
chr15 64385377 64385390 NR2F1 JASPAR yes 64386322 932 70540261
chr15 64385379 64385390 ESRRA JASPAR yes 64386322 932 70540262
chr15 64385379 64385390 ESRRB JASPAR yes 64386322 932 70540263
chr15 64385380 64385388 NR4A2 JASPAR yes 64386322 934 70540264
chr15 64385395 64385401 MZF1 JASPAR yes 64386322 921 70540265
chr15 64385397 64385598 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 724 108145257
chr15 64385407 64385411 NFE TRANSFAC yes 64386322 911 70540266
chr15 64385410 64385910 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 412 108145258
chr15 64385415 64385891 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 64386322 431 108145259
chr15 64385447 64385883 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 64386322 439 108145260
chr15 64385465 64385795 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64386322 527 108145261
chr15 64385467 64385863 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 64386322 459 108145262
chr15 64385470 64386080 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64386322 242 108145263
SNPs associated with SNX1[ENSG00000028528.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 64441414 rs112214362 C T 3125 Esophagus 0.00535307 4024263
chr15 64441414 rs112214362 C T 3125 Esophagus 7.66683e-12 4024263
chr15 64444276 rs77627789 G C 5987 Esophagus 0.0968902 4024294
chr15 64445681 rs34975001 GC G 7392 Pancreas 0.105878 4024310
chr15 63731549 rs75666151 G C,T 654773 Ovary 0.0833539 4019650
chr15 65325698 rs76603421 T G 887409 Uterus 0.0879623 4029472
Details of SNX1[ENSG00000028528.10]
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Genomic Location chr15:64386322-64438289[+]
TSS 64386322
Gene Name SNX1
Ensembl ID ENSG00000028528.10
ENTREZID 6642
Uniprot
Q13596
Protein Name
Sorting nexin-1
Expression levels of SNX1[ENSG00000028528.10]
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