EnhancerDB
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Enhancers that regulate PTPN3[ENSG00000070159.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr9 112161530 112166294 enh87511 112260590 94296
Blood (GM12878)
chr9 112162175 112162241 vista62904 112260590 98349
VISTA
chr9 112173287 112173639 vista62905 112260590 86951
VISTA
chr9 112174485 112182575 enh61640 112260590 78015
Thyroid Peripheral Blood (MM.1S) Blood (OCI-LY7) Blood (GM12878)
chr9 112181102 112181354 vista62906 112260590 79236
VISTA
chr9 112200485 112207384 enh25884 112260590 53206
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Epithelial (MCF-7)
chr9 112209825 112216155 enh25885 112260590 44435
Placenta
chr9 112224369 112248615 enh25886 112260590 11975
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Large Intestine Prostate (RWPE1) Esophagus Cervix (HeLa-S3) Lung Stomach Placenta Colon (HCT116) Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Heart
chr9 112230117 112230469 vista62907 112260590 30121
VISTA
chr9 112238648 112239006 vista62908 112260590 21584
VISTA
chr9 112249154 112253415 enh57122 112260590 7175
Prostate (RWPE1) Large Intestine Lung (PC-9)
chr9 112262069 112262452 vista62909 112260590 1479
VISTA
chr9 112266465 112276875 enh25887 112260590 5875
Liver (HepG2) Large Intestine Thyroid Placenta Peripheral Blood (MM.1S)
chr9 112278145 112287835 enh25888 112260590 17555
Large Intestine Esophagus Stomach Placenta Lung (PC-9) Pancreas Epithelial (MCF-7)
chr9 112293045 112302879 enh25889 112260590 32455
Esophagus Skin (Keratinocyte) Placenta
chr9 112303265 112307535 enh25890 112260590 42675
Placenta
chr9 112313505 112325035 enh25891 112260590 52915
Skin (Keratinocyte) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Placenta Breast Thyroid Lung (PC-9) Pancreas Neural Stem Cells (H9) Epithelial (MCF-7)
chr9 112338258 112342575 enh66714 112260590 77668
Heart
chr9 112347470 112355435 enh66715 112260590 86880
Stomach Heart
chr9 112360545 112372715 enh42177 112260590 99955
Astrocyte Muscle (A673) Brain (SK-N-MC)
Transcript facotrs that regulate PTPN3[ENSG00000070159.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr9 112261865 112262580 POLR2A UCSC Txn Factor no Conserved 112260590 1275 108551391
chr9 112262081 112262092 NFKB1 JASPAR yes 112260590 1491 95395811
chr9 112262081 112262094 NFKB2 JASPAR yes 112260590 1491 95395812
chr9 112262082 112262092 NFKB1 JASPAR yes 112260590 1492 95395813
chr9 112262082 112262092 RELA JASPAR yes 112260590 1492 95395814
chr9 112262082 112262092 REL JASPAR yes 112260590 1492 95395815
chr9 112262082 112262093 NFKB1 JASPAR yes 112260590 1492 95395816
chr9 112262083 112262093 RELA JASPAR yes 112260590 1493 95395817
chr9 112262085 112262090 H4TF1 TRANSFAC yes 112260590 1495 95395818
chr9 112262087 112262093 ETS1 JASPAR yes 112260590 1497 95395819
chr9 112262111 112262115 LFA1 TRANSFAC yes 112260590 1521 95395820
chr9 112262119 112262124 SP1 TRANSFAC yes 112260590 1529 95395821
chr9 112262119 112262130 NRF1 JASPAR yes 112260590 1529 95395822
chr9 112262127 112262136 SP1 TRANSFAC yes 112260590 1537 95395823
chr9 112262128 112262134 SP1 TRANSFAC yes 112260590 1538 95395824
chr9 112262130 112262135 SP1 TRANSFAC yes 112260590 1540 95395825
chr9 112262178 112262189 NRF1 JASPAR yes 112260590 1588 95395826
chr9 112262203 112262208 SP1 TRANSFAC yes 112260590 1613 95395827
chr9 112262203 112262214 E2F4 JASPAR yes 112260590 1613 95395828
chr9 112262204 112262209 SP1 TRANSFAC yes 112260590 1614 95395829
chr9 112262204 112262210 SP1 TRANSFAC yes 112260590 1614 95395830
chr9 112262216 112262225 HIC2 JASPAR yes 112260590 1626 95395831
chr9 112262218 112262229 NRF1 JASPAR yes 112260590 1628 95395832
chr9 112262219 112262223 LFA1 TRANSFAC yes 112260590 1629 95395833
chr9 112262235 112262240 SP1 TRANSFAC yes 112260590 1645 95395834
chr9 112262236 112262241 SP1 TRANSFAC yes 112260590 1646 95395835
chr9 112262236 112262242 SP1 TRANSFAC yes 112260590 1646 95395836
chr9 112262239 112262244 SP1 TRANSFAC yes 112260590 1649 95395837
chr9 112262239 112262246 SP1 TRANSFAC yes 112260590 1649 95395838
chr9 112262249 112262261 ELF4 JASPAR yes 112260590 1659 95395839
chr9 112262253 112262259 ETS1 JASPAR yes 112260590 1663 95395840
chr9 112262253 112262259 SPI1 JASPAR yes 112260590 1663 95395841
chr9 112262258 112262269 NFKB1 JASPAR yes 112260590 1668 95395842
chr9 112262261 112262280 REST JASPAR yes 112260590 1671 95395843
chr9 112262266 112262277 EBF1 JASPAR yes 112260590 1676 95395844
chr9 112262275 112262279 LFA1 TRANSFAC yes 112260590 1685 95395845
chr9 112262282 112262298 GLIS1 JASPAR yes 112260590 1692 95395846
chr9 112262284 112262289 SP1 TRANSFAC yes 112260590 1694 95395847
chr9 112262284 112262296 ZBTB7B JASPAR yes 112260590 1694 95395848
chr9 112262284 112262296 ZBTB7C JASPAR yes 112260590 1694 95395849
chr9 112262285 112262299 GLIS2 JASPAR yes 112260590 1695 95395850
chr9 112262285 112262299 GLIS3 JASPAR yes 112260590 1695 95395851
chr9 112262285 112262299 ZIC1 JASPAR yes 112260590 1695 95395852
chr9 112262285 112262300 ZIC3 JASPAR yes 112260590 1695 95395853
chr9 112262285 112262300 ZIC4 JASPAR yes 112260590 1695 95395854
chr9 112262301 112262315 PLAG1 JASPAR yes 112260590 1711 95395855
chr9 112262306 112262321 TFAP2A JASPAR yes 112260590 1716 95395856
chr9 112262309 112262321 TFAP2A JASPAR yes 112260590 1719 95395857
chr9 112262309 112262321 TFAP2B JASPAR yes 112260590 1719 95395858
chr9 112262309 112262321 TFAP2C JASPAR yes 112260590 1719 95395859
chr9 112262310 112262319 TFAP2A JASPAR yes 112260590 1720 95395860
chr9 112262311 112262320 TFAP2A JASPAR yes 112260590 1721 95395861
chr9 112262318 112262333 ZIC3 JASPAR yes 112260590 1728 95395862
chr9 112262318 112262333 ZIC4 JASPAR yes 112260590 1728 95395863
chr9 112262319 112262333 ZIC1 JASPAR yes 112260590 1729 95395864
chr9 112262337 112262341 NFE TRANSFAC yes 112260590 1747 95395865
chr9 112262341 112262362 ZNF263 JASPAR yes 112260590 1751 95395866
chr9 112262344 112262365 ZNF263 JASPAR yes 112260590 1754 95395867
chr9 112262345 112262351 MZF1 JASPAR yes 112260590 1755 95395868
chr9 112262353 112262374 ZNF263 JASPAR yes 112260590 1763 95395869
chr9 112262357 112262362 GATA2 JASPAR yes 112260590 1767 95395870
chr9 112262401 112262420 PAX5 JASPAR yes 112260590 1811 95395871
chr9 112262403 112262407 LFA1 TRANSFAC yes 112260590 1813 95395872
chr9 112262431 112262436 ETS2 TRANSFAC yes 112260590 1841 95395873
chr9 112262433 112262451 IRF2 JASPAR yes 112260590 1843 95395874
SNPs associated with PTPN3[ENSG00000070159.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr9 112302365 rs7046719 T C 41775 Esophagus 3.94975e-05 11221330
chr9 111924145 rs73523106 T G 213601 Esophagus 0.112556 11218804
chr9 113003435 rs75485873 C T 742845 Esophagus 0.0396992 11226698
chr9 111539177 rs2153356 G A,C 598569 Heart 0.27295 11216937
chr9 111372608 rs10816688 T C 765138 Pancreas 0.154846 11215573
chr9 112947956 rs10980247 C T 687366 Breast 0.161302 11226310
chr9 112274194 rs2150260 A G 13604 Spleen 0.00168761 11221020
chr9 112276357 rs1411682 C T 15767 Thyroid 4.35438e-11 11221038
chr9 112355393 rs10125565 G T 94803 Liver 0.0396904 11221765
chr9 111272976 rs10979374 C G 864770 Adrenal 0.265132 11214659
Details of PTPN3[ENSG00000070159.9]
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Genomic Location chr9:112137746-112260590[-]
TSS 112260590
Gene Name PTPN3
Ensembl ID ENSG00000070159.9
ENTREZID 5774
Uniprot
B7ZA03
B7Z3V3
Q8N4S3
P26045
B7Z9V1
Protein Name
Tyrosine-protein phosphatase non-receptor type
Tyrosine-protein phosphatase non-receptor type 3
Expression levels of PTPN3[ENSG00000070159.9]
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