EnhancerDB
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Enhancers that regulate VPS29[ENSG00000111237.14]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 110852325 110862355 enh14988 110939922 77567
Bone Marrow (K562) Placenta Uterus Blood (OCI-LY7)
chr12 110866971 110872545 enh2591 110939922 67377
Prostate (RWPE1) Colon (HCT116) Blood (Karpas-422) Pancreas (Panc1) Uterus
chr12 110867136 110867499 vista14876 110939922 72423
VISTA
chr12 110931784 110931990 vista14877 110939922 7932
VISTA
chr12 110970740 110983659 enh43820 110939922 30818
Brain (SK-N-MC) Ovary Esophagus Lung Blood (GM12878) Stomach Muscle (A673) Peripheral Blood (MM.1S) Pancreas Spleen Muscle (Myotube) Uterus Heart
chr12 110984625 110988775 enh99036 110939922 44703
Uterus
chr12 110991201 111006555 enh2592 110939922 51279
Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr12 111001824 111001977 vista14878 110939922 61902
VISTA
chr12 111010145 111019654 enh2593 110939922 70223
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Blood (GM12878) Stomach Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Uterus Blood (T-cell) Heart
chr12 111015565 111016027 vista14879 110939922 75643
VISTA
chr12 111016111 111016444 vista14880 110939922 76189
VISTA
chr12 111019873 111020249 vista14881 110939922 79951
VISTA
chr12 111023118 111023488 vista14882 110939922 83196
VISTA
chr12 111026631 111031575 enh2594 110939922 86709
Liver (HepG2) Large Intestine Blood (OCI-LY7) Placenta Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Uterus Blood (T-cell) Stomach
chr12 111028698 111029042 vista14883 110939922 88776
VISTA
chr12 111036090 111046338 enh2595 110939922 96168
Prostate (RWPE1) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Blood (Karpas-422) Blood (T-cell)
Transcript facotrs that regulate VPS29[ENSG00000111237.14]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with VPS29[ENSG00000111237.14], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 111026784 rs1265744 C T 86862 Heart 2.03971e-05 2898504
chr12 110602275 rs7975364 A G,T 326627 Pancreas 0.00818963 2896429
chr12 110168978 rs140889757 C G 759924 Liver 0.0986293 2894336
Details of VPS29[ENSG00000111237.14]
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Genomic Location chr12:110928902-110939922[-]
TSS 110939922
Gene Name VPS29
Ensembl ID ENSG00000111237.14
ENTREZID 51699
Uniprot
Q9UBQ0
F8VXU5
Protein Name
VPS29 protein
Vacuolar protein sorting-associated protein 29
Expression levels of VPS29[ENSG00000111237.14]
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