EnhancerDB
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Enhancers that regulate CCDC62[ENSG00000130783.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 123159985 123168655 enh15071 123258874 90219
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Muscle (Myoblast) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr12 123169745 123175135 enh109584 123258874 83739
Stomach
chr12 123179525 123186187 enh58488 123258874 72687
Skin (Keratinocyte) Lung (PC-9)
chr12 123190665 123197595 enh96369 123258874 61279
Lung (PC-9) Epithelial (MCF-7)
chr12 123207042 123207235 vista15211 123258874 51639
VISTA
chr12 123207180 123213095 enh2663 123258874 45779
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Blood (OCI-LY7) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 123216800 123217069 vista15212 123258874 41805
VISTA
chr12 123218047 123218405 vista15213 123258874 40469
VISTA
chr12 123221225 123225375 enh80417 123258874 33499
Prostate (PC-3)
chr12 123223226 123223440 vista15214 123258874 35434
VISTA
chr12 123228705 123228954 vista15215 123258874 29920
VISTA
chr12 123233355 123233499 vista15216 123258874 25375
VISTA
chr12 123291274 123295688 enh86151 123258874 32400
Colon (HCT116) Prostate (RWPE1) Lung (PC-9)
chr12 123302841 123307775 enh2664 123258874 43967
Blood (OCI-LY7) Blood (Karpas-422)
chr12 123317054 123331955 enh15072 123258874 58180
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Thyroid Lung (PC-9) Pancreas (Panc1) Heart
chr12 123320749 123321200 vista15217 123258874 61875
VISTA
chr12 123333029 123337585 enh115531 123258874 74155
Brain (SK-N-SH)
chr12 123345074 123349635 enh64666 123258874 86200
Liver (HepG2) Brain (SK-N-SH) Heart
chr12 123352500 123352698 vista15218 123258874 93626
VISTA
chr12 123353805 123379047 enh15073 123258874 94931
Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Thymus Heart
Transcript facotrs that regulate CCDC62[ENSG00000130783.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with CCDC62[ENSG00000130783.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 122645048 rs4319543 A C 613826 Breast 0.00634862 2957472
chr12 123229106 rs10466883 G T 29768 Ovary 0.0390737 2959921
chr12 123913756 rs28478828 T C 601681 Uterus 0.304626 2963108
chr12 123330898 rs76826575 G T 18823 Lung 0.216041 2960302
chr12 123915711 rs28780730 A C 603636 Stomach 0.22183 2963129
chr12 123350204 rs12255 C T 38129 Adrenal 0.0251581 2960489
Details of CCDC62[ENSG00000130783.9]
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Genomic Location chr12:123258874-123312075[+]
TSS 123258874
Gene Name CCDC62
Ensembl ID ENSG00000130783.9
ENTREZID 84660
Uniprot
Q6P9F0
Protein Name
isoform CRA_a
Coiled-coil domain containing 62
Coiled-coil domain-containing protein 62
Expression levels of CCDC62[ENSG00000130783.9]
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