EnhancerDB
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Enhancers that regulate NPHP4[ENSG00000131697.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 5951345 5959635 enh74135 6052533 92898
Bone Marrow (K562) Muscle (A673)
chr1 5957166 5957512 vista153 6052533 95021
VISTA
chr1 5969325 5985035 enh74136 6052533 67498
Liver (HepG2) Brain (SK-N-SH) Ovary Prostate (RWPE1) Muscle (A673) Pancreas
chr1 5994702 6001652 enh26498 6052533 50881
Muscle (Myoblast) Astrocyte Bone (Osteoblast) Prostate (RWPE1)
chr1 6013105 6017755 enh92024 6052533 34778
Liver (HepG2) Peripheral Blood (MM.1S)
chr1 6033285 6037475 enh47130 6052533 15058
Pancreas Thymus
chr1 6034742 6034859 vista154 6052533 17674
VISTA
chr1 6038605 6045695 enh26499 6052533 6838
Astrocyte Prostate (PC-3) Muscle (A673) Lung (A549)
chr1 6040561 6040806 vista155 6052533 11727
VISTA
chr1 6053603 6054107 vista156 6052533 1070
VISTA
chr1 6054896 6055025 vista157 6052533 2363
VISTA
chr1 6058189 6066095 enh63982 6052533 5656
Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Muscle (A673) Heart
chr1 6067765 6078535 enh49642 6052533 15232
Prostate (PC-3) Blood (T-cell) Large Intestine
chr1 6088225 6088518 vista158 6052533 35692
VISTA
chr1 6116483 6123477 enh78947 6052533 63950
Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Epithelial (MCF-7)
chr1 6124496 6131978 enh115340 6052533 71963
Brain (SK-N-SH)
Transcript facotrs that regulate NPHP4[ENSG00000131697.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 6049035 6056109 ZNF274 GTRD no Bone Marrow (K562) 6052533 3498 107801891
chr1 6049035 6056109 ZNF274 GTRD no Bone Marrow (K562) 6052533 3498 107801892
chr1 6053627 6053631 YY1 TRANSFAC yes 6052533 1094 118220646
chr1 6053655 6053666 E2F6 JASPAR yes 6052533 1122 118220647
chr1 6053662 6053672 SP1 JASPAR yes 6052533 1129 118220648
chr1 6053663 6053669 SP1 TRANSFAC yes 6052533 1130 118220649
chr1 6053664 6053682 NFYA JASPAR yes 6052533 1131 118220650
chr1 6053665 6053685 RREB1 JASPAR yes 6052533 1132 118220651
chr1 6053677 6053688 SPDEF JASPAR yes 6052533 1144 118220652
chr1 6053678 6053699 ZNF263 JASPAR yes 6052533 1145 118220653
chr1 6053699 6053714 HNF4G JASPAR yes 6052533 1166 118220654
chr1 6053702 6053706 YY1 TRANSFAC yes 6052533 1169 118220655
chr1 6053707 6053719 INSM1 JASPAR yes 6052533 1174 118220656
chr1 6053736 6053745 THAP1 JASPAR yes 6052533 1203 118220657
chr1 6053759 6053769 FIGLA JASPAR yes 6052533 1226 118220658
chr1 6053765 6053776 NFKB1 JASPAR yes 6052533 1232 118220659
chr1 6053766 6053776 NFKB1 JASPAR yes 6052533 1233 118220660
chr1 6053766 6053776 RELA JASPAR yes 6052533 1233 118220661
chr1 6053766 6053776 REL JASPAR yes 6052533 1233 118220662
chr1 6053775 6053786 TBX2 JASPAR yes 6052533 1242 118220663
chr1 6053776 6053786 TBX21 JASPAR yes 6052533 1243 118220664
chr1 6053788 6053803 RFX5 JASPAR yes 6052533 1255 118220665
chr1 6053788 6053808 ESR1 JASPAR yes 6052533 1255 118220666
chr1 6053797 6053802 MYC TRANSFAC yes 6052533 1264 118220667
chr1 6053802 6053823 ZNF263 JASPAR yes 6052533 1269 118220668
chr1 6053805 6053816 E2F6 JASPAR yes 6052533 1272 118220669
chr1 6053808 6053829 ZNF263 JASPAR yes 6052533 1275 118220670
chr1 6053809 6053819 ZNF740 JASPAR yes 6052533 1276 118220671
chr1 6053812 6053818 MZF1 JASPAR yes 6052533 1279 118220672
chr1 6053813 6053823 SP1 JASPAR yes 6052533 1280 118220673
chr1 6053815 6053825 ZNF740 JASPAR yes 6052533 1282 118220674
chr1 6053815 6053836 ZNF263 JASPAR yes 6052533 1282 118220675
chr1 6053842 6053848 SOX10 JASPAR yes 6052533 1309 118220676
chr1 6053844 6053855 JUNB JASPAR yes 6052533 1311 118220677
chr1 6053845 6053856 JUND JASPAR yes 6052533 1312 118220678
chr1 6053845 6053863 MAFF JASPAR yes 6052533 1312 118220679
chr1 6053846 6053857 NFE2L2 JASPAR yes 6052533 1313 118220680
chr1 6053846 6053861 MAFK JASPAR yes 6052533 1313 118220681
chr1 6053855 6053859 YY1 TRANSFAC yes 6052533 1322 118220682
chr1 6053857 6053869 INSM1 JASPAR yes 6052533 1324 118220683
chr1 6053870 6053873 MYB TRANSFAC yes 6052533 1337 118220684
chr1 6053878 6053889 FLI1 JASPAR yes 6052533 1345 118220685
chr1 6053879 6053889 ERF JASPAR yes 6052533 1346 118220686
chr1 6053879 6053889 ETS1 JASPAR yes 6052533 1346 118220687
chr1 6053879 6053890 ETV2 JASPAR yes 6052533 1346 118220688
chr1 6053879 6053892 ELF1 JASPAR yes 6052533 1346 118220689
chr1 6053884 6053897 ZBED1 JASPAR yes 6052533 1351 118220690
chr1 6053885 6053889 NFE TRANSFAC yes 6052533 1352 118220691
chr1 6053885 6053898 ZBED1 JASPAR yes 6052533 1352 118220692
chr1 6053897 6053918 REST JASPAR yes 6052533 1364 118220693
chr1 6053898 6053917 REST JASPAR yes 6052533 1365 118220694
chr1 6053934 6053943 RUNX2 JASPAR yes 6052533 1401 118220695
chr1 6053950 6053965 RFX5 JASPAR yes 6052533 1417 118220696
chr1 6053980 6053990 SP1 JASPAR yes 6052533 1447 118220697
chr1 6053982 6053988 MAZ TRANSFAC yes 6052533 1449 118220698
chr1 6053986 6054007 ZNF263 JASPAR yes 6052533 1453 118220699
chr1 6054000 6054005 TFAP2A TRANSFAC yes 6052533 1467 118220700
chr1 6054000 6054006 MZF1 JASPAR yes 6052533 1467 118220701
chr1 6054007 6054021 GLIS2 JASPAR yes 6052533 1474 118220702
chr1 6054027 6054045 IRF2 JASPAR yes 6052533 1494 118220703
chr1 6054030 6054044 TCF7L2 JASPAR yes 6052533 1497 118220704
chr1 6054030 6054045 PRDM1 JASPAR yes 6052533 1497 118220705
chr1 6054037 6054041 YY1 TRANSFAC yes 6052533 1504 118220706
chr1 6054071 6054086 JUND JASPAR yes 6052533 1538 118220707
chr1 6054073 6054087 BATF3 JASPAR yes 6052533 1540 118220708
chr1 6054074 6054086 JDP2 JASPAR yes 6052533 1541 118220709
chr1 6054081 6054088 NKX3-1 JASPAR yes 6052533 1548 118220710
chr1 6054095 6054100 TFAP2A TRANSFAC yes 6052533 1562 118220711
chr1 6054095 6054101 MZF1 JASPAR yes 6052533 1562 118220712
chr1 6054097 6054102 ETS2 TRANSFAC yes 6052533 1564 118220713
chr1 6054902 6054919 RXRA JASPAR yes 6052533 2369 118220714
chr1 6054908 6054914 PEA3 TRANSFAC yes 6052533 2375 118220715
chr1 6054908 6054919 FLI1 JASPAR yes 6052533 2375 118220716
chr1 6054928 6054940 IRF1 JASPAR yes 6052533 2395 118220717
chr1 6054937 6054943 NFIC JASPAR yes 6052533 2404 118220718
chr1 6054941 6054952 ELK4 JASPAR yes 6052533 2408 118220719
chr1 6054944 6054950 ETS1 JASPAR yes 6052533 2411 118220720
chr1 6054944 6054954 ELK1 JASPAR yes 6052533 2411 118220721
chr1 6054959 6054970 E2F6 JASPAR yes 6052533 2426 118220722
chr1 6054961 6054969 SP1 TRANSFAC yes 6052533 2428 118220723
chr1 6054961 6054971 SP1 JASPAR yes 6052533 2428 118220724
chr1 6054963 6054969 MAZ TRANSFAC yes 6052533 2430 118220725
chr1 6054966 6054979 NFKB1 JASPAR yes 6052533 2433 118220726
chr1 6054966 6054979 NFKB2 JASPAR yes 6052533 2433 118220727
chr1 6054967 6054972 SP1 TRANSFAC yes 6052533 2434 118220728
chr1 6054967 6054978 NFKB1 JASPAR yes 6052533 2434 118220729
chr1 6054981 6054991 GABPA JASPAR yes 6052533 2448 118220730
chr1 6054982 6054990 EHF JASPAR yes 6052533 2449 118220731
chr1 6055003 6055018 RFX5 JASPAR yes 6052533 2470 118220732
chr1 6055011 6055014 MYB TRANSFAC yes 6052533 2478 118220733
SNPs associated with NPHP4[ENSG00000131697.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 5999020 rs11120832 T C 0 Esophagus 4.30865e-09 35655
chr1 6052074 rs35722714 C CCCA 0 Esophagus 1.06219e-22 35988
chr1 6052074 rs35722714 C CCCA 0 Esophagus 2.01366e-10 35988
chr1 6051923 rs11576872 G C 0 Heart 0.000624247 35984
chr1 5893451 rs11121039 T C 29420 Pancreas 0.215909 35101
chr1 6059229 rs1295100 T G 6696 Spleen 0.000718153 36058
chr1 6054055 rs11578208 T C 1522 Ovary 0.00158525 36017
chr1 6054055 rs11578208 T C 1522 Uterus 0.00981798 36017
chr1 6052074 rs35722714 C CCCA 0 Liver 2.19481e-20 35988
chr1 5977192 rs61762117 T C 0 Lung 8.11292e-17 35504
Details of NPHP4[ENSG00000131697.13]
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Genomic Location chr1:5922871-6052533[-]
TSS 6052533
Gene Name NPHP4
Ensembl ID ENSG00000131697.13
ENTREZID 261734
Uniprot
O75161
B3KW36
Protein Name
Nephrocystin-4
Expression levels of NPHP4[ENSG00000131697.13]
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