EnhancerDB
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Enhancers that regulate LHX1[ENSG00000132130.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 35202185 35211139 enh32179 35294084 82945
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Bone (Osteoblast) Muscle (A673) Colon (HCT116) Lung (PC-9) Pancreas (Panc1)
chr17 35208602 35208822 vista24578 35294084 85262
VISTA
chr17 35211505 35218235 enh44422 35294084 75849
Cervix (HeLa-S3) Esophagus Lung (PC-9) Muscle (Myotube) Stomach
chr17 35225525 35229675 enh110891 35294084 64409
Cervix (HeLa-S3)
chr17 35235816 35240108 enh58755 35294084 53976
Skin (Keratinocyte)
chr17 35236064 35236105 vista24579 35294084 57979
VISTA
chr17 35243585 35247735 enh104322 35294084 46349
Peripheral Blood (MM.1S)
chr17 35247845 35251995 enh109762 35294084 42089
Stomach
chr17 35257005 35261155 enh32180 35294084 32929
Astrocyte
chr17 35273515 35283435 enh32181 35294084 10649
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Stomach Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas (Panc1) Epithelial (MCF-7)
chr17 35278050 35278157 vista24580 35294084 15927
VISTA
chr17 35281857 35282039 vista24581 35294084 12045
VISTA
chr17 35283485 35287635 enh91155 35294084 6449
Bone Marrow (K562)
chr17 35288156 35288415 vista24582 35294084 5669
VISTA
chr17 35292129 35292558 vista24583 35294084 1526
VISTA
chr17 35296825 35297078 vista24584 35294084 2741
VISTA
chr17 35327645 35331795 enh75898 35294084 33561
Muscle (A673) Brain (SK-N-MC)
chr17 35329349 35329944 vista682 35294084 35265
VISTA
chr17 35334308 35343215 enh4373 35294084 40224
Cervix (HeLa-S3) Brain (SK-N-MC) Astrocyte Lung (A549) Muscle (A673) Blood (Karpas-422) Pancreas (Panc1)
chr17 35336093 35337226 vista683 35294084 42009
VISTA
chr17 35349842 35353996 enh94968 35294084 55758
Muscle (Myoblast)
chr17 35367705 35372595 enh4374 35294084 73621
Pancreas Blood (Karpas-422)
chr17 35380685 35384835 enh102929 35294084 86601
Liver
Transcript facotrs that regulate LHX1[ENSG00000132130.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 35288747 35301470 EZH2 UCSC Txn Factor no Conserved 35294084 0 108251729
chr17 35288747 35301470 EZH2 UCSC Txn Factor no Conserved 35294084 0 108251730
chr17 35291474 35292375 TEF1 GTRD no Bone (Osteoblast) 35294084 1709 108251731
chr17 35291646 35292246 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1838 108251732
chr17 35291719 35292349 ZBTB33 GTRD no Brain (SK-N-SH) 35294084 1735 108251733
chr17 35291728 35292164 ZNF274 GTRD no Bone Marrow (K562) 35294084 1920 108251734
chr17 35291834 35292441 ZBTB33 GTRD no Brain (SK-N-SH) 35294084 1643 108251735
chr17 35291861 35292477 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1607 108251736
chr17 35291863 35292463 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1621 108251737
chr17 35291897 35292207 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1877 108251738
chr17 35291949 35292225 ZBTB33 GTRD no Brain (SK-N-SH) 35294084 1859 108251739
chr17 35292027 35292371 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1713 108251740
chr17 35292028 35292338 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 35294084 1746 108251741
chr17 35292028 35292779 POLR2A UCSC Txn Factor no Conserved 35294084 1305 108251742
chr17 35292058 35292498 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 35294084 1586 108251743
chr17 35292075 35292291 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 35294084 1793 108251744
chr17 35292082 35292928 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1156 108251745
chr17 35292132 35292144 HINFP JASPAR yes 35294084 1940 21227450
chr17 35292135 35292139 H4TF2 TRANSFAC yes 35294084 1945 21227451
chr17 35292141 35292491 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 35294084 1593 108251746
chr17 35292146 35292157 E2F1 JASPAR yes 35294084 1927 21227452
chr17 35292171 35292451 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 35294084 1633 108251747
chr17 35292175 35292185 SP1 JASPAR yes 35294084 1899 21227453
chr17 35292176 35292183 SP1 TRANSFAC yes 35294084 1901 21227454
chr17 35292176 35292186 SP1 JASPAR yes 35294084 1898 21227455
chr17 35292177 35292184 SP1 TRANSFAC yes 35294084 1900 21227456
chr17 35292178 35292183 SP1 TRANSFAC yes 35294084 1901 21227457
chr17 35292178 35292184 SP1 TRANSFAC yes 35294084 1900 21227458
chr17 35292178 35292185 SP1 TRANSFAC yes 35294084 1899 21227459
chr17 35292179 35292191 INSM1 JASPAR yes 35294084 1893 21227460
chr17 35292205 35292226 ZNF263 JASPAR yes 35294084 1858 21227461
chr17 35292216 35292225 SP1 TRANSFAC yes 35294084 1859 21227462
chr17 35292219 35292225 NFE2 TRANSFAC yes 35294084 1859 21227463
chr17 35292300 35292315 ZIC3 JASPAR yes 35294084 1769 21227464
chr17 35292300 35292315 ZIC4 JASPAR yes 35294084 1769 21227465
chr17 35292301 35292315 ZIC1 JASPAR yes 35294084 1769 21227466
chr17 35292314 35292327 ZBTB18 JASPAR yes 35294084 1757 21227467
chr17 35292316 35292326 MAX JASPAR yes 35294084 1758 21227468
chr17 35292325 35292346 ZNF263 JASPAR yes 35294084 1738 21227469
chr17 35292333 35292343 TBX21 JASPAR yes 35294084 1741 21227470
chr17 35292333 35292344 TBX20 JASPAR yes 35294084 1740 21227471
chr17 35292334 35292342 TBX5 JASPAR yes 35294084 1742 21227472
chr17 35292338 35292842 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 35294084 1242 108251748
chr17 35292354 35292358 H4TF2 TRANSFAC yes 35294084 1726 21227473
chr17 35292370 35292374 ESR1 TRANSFAC yes 35294084 1710 21227474
chr17 35292372 35292381 THAP1 JASPAR yes 35294084 1703 21227475
chr17 35292375 35292379 LFA1 TRANSFAC yes 35294084 1705 21227476
chr17 35292375 35292389 TLX1 JASPAR yes 35294084 1695 21227477
chr17 35292410 35292425 STAT2 JASPAR yes 35294084 1659 21227478
chr17 35292411 35292425 STAT1 JASPAR yes 35294084 1659 21227479
chr17 35292412 35292427 IRF9 JASPAR yes 35294084 1657 21227480
chr17 35292414 35292433 RFX2 JASPAR yes 35294084 1651 21227481
chr17 35292429 35292441 CREB1 JASPAR yes 35294084 1643 21227482
chr17 35292437 35292448 TFAP2A JASPAR yes 35294084 1636 21227483
chr17 35292437 35292448 TFAP2B JASPAR yes 35294084 1636 21227484
chr17 35292437 35292448 TFAP2C JASPAR yes 35294084 1636 21227485
chr17 35292445 35292460 ZIC3 JASPAR yes 35294084 1624 21227486
chr17 35292446 35292460 GLIS2 JASPAR yes 35294084 1624 21227487
chr17 35292448 35292453 SP1 TRANSFAC yes 35294084 1631 21227488
chr17 35292449 35292454 SP1 TRANSFAC yes 35294084 1630 21227489
chr17 35292449 35292455 SP1 TRANSFAC yes 35294084 1629 21227490
chr17 35292469 35292779 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 35294084 1305 108251749
chr17 35292473 35292488 RFX5 JASPAR yes 35294084 1596 21227491
chr17 35292482 35292487 SP1 TRANSFAC yes 35294084 1597 21227492
chr17 35292486 35292496 GCM2 JASPAR yes 35294084 1588 21227493
chr17 35292488 35292497 THAP1 JASPAR yes 35294084 1587 21227494
chr17 35292491 35292496 SP1 TRANSFAC yes 35294084 1588 21227495
chr17 35292498 35292509 NRL JASPAR yes 35294084 1575 21227496
chr17 35292513 35292519 NFIC JASPAR yes 35294084 1565 21227497
chr17 35292546 35292856 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 1228 108251750
chr17 35294038 35297524 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 46 108251751
chr17 35296580 35296890 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 2496 108251752
chr17 35296689 35297289 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 35294084 2605 108251753
chr17 35296828 35296840 HINFP JASPAR yes 35294084 2744 21227498
chr17 35296832 35296846 ZIC1 JASPAR yes 35294084 2748 21227499
chr17 35296867 35296882 ZIC3 JASPAR yes 35294084 2783 21227500
chr17 35296869 35296880 E2F1 JASPAR yes 35294084 2785 21227501
chr17 35296870 35296881 E2F4 JASPAR yes 35294084 2786 21227502
chr17 35296870 35296881 E2F6 JASPAR yes 35294084 2786 21227503
chr17 35296874 35296880 MAZ TRANSFAC yes 35294084 2790 21227504
chr17 35296897 35296909 INSM1 JASPAR yes 35294084 2813 21227505
chr17 35296912 35296916 H4TF2 TRANSFAC yes 35294084 2828 21227506
chr17 35296980 35296986 NFIC JASPAR yes 35294084 2896 21227507
chr17 35296987 35296991 NFE TRANSFAC yes 35294084 2903 21227508
chr17 35296988 35296995 E2F1 TRANSFAC yes 35294084 2904 21227509
chr17 35297030 35297044 GLIS2 JASPAR yes 35294084 2946 21227510
chr17 35297039 35297049 NFKB1 JASPAR yes 35294084 2955 21227511
chr17 35297039 35297050 NFKB1 JASPAR yes 35294084 2955 21227512
chr17 35297053 35297065 FOXI1 JASPAR yes 35294084 2969 21227513
chr17 35297054 35297066 FOXC2 JASPAR yes 35294084 2970 21227514
chr17 35297055 35297066 FOXC1 JASPAR yes 35294084 2971 21227515
chr17 35297056 35297067 FOXA1 JASPAR yes 35294084 2972 21227516
chr17 35297057 35297072 FOXP1 JASPAR yes 35294084 2973 21227517
chr17 35297058 35297067 SRY JASPAR yes 35294084 2974 21227518
chr17 35297058 35297069 FOXP2 JASPAR yes 35294084 2974 21227519
chr17 35297058 35297070 FOXC2 JASPAR yes 35294084 2974 21227520
chr17 35297058 35297072 FOXF2 JASPAR yes 35294084 2974 21227521
chr17 35297059 35297067 FOXD1 JASPAR yes 35294084 2975 21227522
chr17 35297059 35297067 FOXG1 JASPAR yes 35294084 2975 21227523
chr17 35297059 35297067 FOXO3 JASPAR yes 35294084 2975 21227524
chr17 35297060 35297067 FOXD2 JASPAR yes 35294084 2976 21227525
chr17 35297060 35297067 FOXI1 JASPAR yes 35294084 2976 21227526
chr17 35297060 35297067 FOXL1 JASPAR yes 35294084 2976 21227527
chr17 35297060 35297067 FOXO4 JASPAR yes 35294084 2976 21227528
chr17 35297060 35297067 FOXO6 JASPAR yes 35294084 2976 21227529
chr17 35297060 35297067 FOXP3 JASPAR yes 35294084 2976 21227530
chr17 35297060 35297068 FOXO3 JASPAR yes 35294084 2976 21227531
SNPs associated with LHX1[ENSG00000132130.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
Details of LHX1[ENSG00000132130.7]
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Genomic Location chr17:35294084-35301917[+]
TSS 35294084
Gene Name LHX1
Ensembl ID ENSG00000132130.7
ENTREZID 3975
Uniprot
Q58F18
P48742
Protein Name
LHX1 protein
LIM/homeobox protein Lhx1
Expression levels of LHX1[ENSG00000132130.7]
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