EnhancerDB
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Enhancers that regulate VPS4A[ENSG00000132612.14]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 69249331 69261375 enh31896 69345259 83884
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung (A549) Stomach Colon (HCT116) Thyroid Pancreas (Panc1) Lung (PC-9) Spleen Uterus Epithelial (MCF-7)
chr16 69270325 69279235 enh75840 69345259 66024
Muscle (A673) Uterus
chr16 69284365 69290115 enh47968 69345259 55144
Blood (T-cell) Stomach Thyroid Uterus Thymus Epithelial (MCF-7)
chr16 69298365 69303775 enh91116 69345259 41484
Bone Marrow (K562) Liver (HepG2)
chr16 69306985 69313595 enh31897 69345259 31664
Brain (SK-N-SH) Astrocyte Bone (Osteoblast) Muscle (A673) Muscle (Myoblast) Uterus Stomach
chr16 69318929 69323535 enh62564 69345259 21724
Esophagus Liver Lung Muscle (A673) Uterus Stomach
chr16 69345968 69346332 vista22844 69345259 709
VISTA
chr16 69351854 69351929 vista22845 69345259 6595
VISTA
chr16 69401747 69405973 enh60625 69345259 56488
Blood (OCI-LY7)
chr16 69408605 69414915 enh31898 69345259 63346
Astrocyte Liver (HepG2)
chr16 69423651 69440851 enh16750 69345259 78392
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr16 69432325 69432475 vista22846 69345259 87066
VISTA
chr16 69442470 69442627 vista22847 69345259 97211
VISTA
chr16 69443176 69451168 enh86219 69345259 97917
Colon (HCT116)
chr16 69444205 69444538 vista22848 69345259 98946
VISTA
Transcript facotrs that regulate VPS4A[ENSG00000132612.14]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 69344506 69346256 TCF7L2 GTRD no Colon (HCT116) 69345259 753 108203120
chr16 69344607 69346135 POLR2A UCSC Txn Factor no Conserved 69345259 652 108203121
chr16 69344756 69346101 TCF7L2 GTRD no Colon (HCT116) 69345259 503 108203122
chr16 69345035 69347372 ZNF274 GTRD no Blood (GM12878) 69345259 224 108203123
chr16 69345173 69346601 ZNF274 GTRD no Blood (GM12878) 69345259 86 108203124
chr16 69345221 69346181 ZNF274 GTRD no Blood (GM12878) 69345259 38 108203125
chr16 69345549 69346199 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 290 108203126
chr16 69345592 69346116 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 69345259 333 108203127
chr16 69345597 69346253 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 69345259 338 108203128
chr16 69345600 69346110 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 69345259 341 108203129
chr16 69345639 69346386 ZNF274 GTRD no Blood (GM12878) 69345259 380 108203130
chr16 69345655 69346512 ZNF274 GTRD no Blood (GM12878) 69345259 396 108203131
chr16 69345695 69346391 ZNF274 GTRD no Blood (GM12878) 69345259 436 108203132
chr16 69345702 69346222 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 69345259 443 108203133
chr16 69345709 69346191 CTCF UCSC Txn Factor no Conserved 69345259 450 108203134
chr16 69345713 69346604 ZNF274 GTRD no Blood (GM12878) 69345259 454 108203135
chr16 69345721 69346541 ZNF274 GTRD no Blood (GM12878) 69345259 462 108203136
chr16 69345737 69346141 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 478 108203137
chr16 69345751 69346147 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 492 108203138
chr16 69345753 69346123 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 494 108203139
chr16 69345764 69346140 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 505 108203140
chr16 69345777 69346177 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 518 108203141
chr16 69345777 69346393 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 518 108203142
chr16 69345795 69345999 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 69345259 536 108203143
chr16 69345812 69346199 ZNF274 GTRD no Bone Marrow (K562) 69345259 553 108203144
chr16 69345814 69346198 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 555 108203145
chr16 69345819 69346135 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 560 108203146
chr16 69345822 69346112 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 563 108203147
chr16 69345825 69346281 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 566 108203148
chr16 69345830 69346090 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 571 108203149
chr16 69345832 69346102 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 69345259 573 108203150
chr16 69345834 69346094 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 69345259 575 108203151
chr16 69345847 69346063 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 69345259 588 108203152
chr16 69345847 69346191 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 69345259 588 108203153
chr16 69345850 69346080 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 591 108203154
chr16 69345851 69346188 ZNF274 GTRD no Blood (GM12878) 69345259 592 108203155
chr16 69345854 69346074 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 595 108203156
chr16 69345855 69346026 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 596 108203157
chr16 69345863 69346153 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 69345259 604 108203158
chr16 69345873 69346299 ZNF274 GTRD no Blood (GM12878) 69345259 614 108203159
chr16 69345880 69346643 ZNF274 GTRD no Blood (GM12878) 69345259 621 108203160
chr16 69345882 69346064 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 69345259 623 108203161
chr16 69345897 69346099 ZNF274 GTRD no Blood (GM12878) 69345259 638 108203162
chr16 69345915 69346012 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 69345259 656 108203163
chr16 69345968 69345979 FOSL2 JASPAR yes 69345259 709 49387586
chr16 69345971 69345981 SP1 JASPAR yes 69345259 712 49387587
chr16 69345987 69345991 NFE TRANSFAC yes 69345259 728 49387588
chr16 69346000 69346005 SP1 TRANSFAC yes 69345259 741 49387589
chr16 69346005 69346387 ZNF274 GTRD no Blood (GM12878) 69345259 746 108203164
chr16 69346010 69346386 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 69345259 751 108203165
chr16 69346069 69346082 NR2F1 JASPAR yes 69345259 810 49387590
chr16 69346071 69346082 ESRRA JASPAR yes 69345259 812 49387591
chr16 69346071 69346082 ESRRB JASPAR yes 69345259 812 49387592
chr16 69346072 69346080 NR4A2 JASPAR yes 69345259 813 49387593
chr16 69346081 69346102 IRF1 JASPAR yes 69345259 822 49387594
chr16 69346083 69346098 STAT2 JASPAR yes 69345259 824 49387595
chr16 69346089 69346104 FOXP1 JASPAR yes 69345259 830 49387596
chr16 69346090 69346105 LEF1 JASPAR yes 69345259 831 49387597
chr16 69346091 69346105 TCF7L2 JASPAR yes 69345259 832 49387598
chr16 69346093 69346107 IRF7 JASPAR yes 69345259 834 49387599
chr16 69346111 69346489 ZNF274 GTRD no Blood (GM12878) 69345259 852 108203166
chr16 69346170 69346181 PHOX2A JASPAR yes 69345259 911 49387600
chr16 69346172 69346177 MYB TRANSFAC yes 69345259 913 49387601
chr16 69346176 69346186 MEOX2 JASPAR yes 69345259 917 49387602
chr16 69346201 69346214 SMAD2 JASPAR yes 69345259 942 49387603
chr16 69346224 69346228 YY1 TRANSFAC yes 69345259 965 49387604
chr16 69346228 69346241 SMAD2 JASPAR yes 69345259 969 49387605
chr16 69346230 69346238 MEIS2 JASPAR yes 69345259 971 49387606
chr16 69346230 69346238 MEIS3 JASPAR yes 69345259 971 49387607
chr16 69346240 69346246 SOX10 JASPAR yes 69345259 981 49387608
chr16 69346263 69346275 PROX1 JASPAR yes 69345259 1004 49387609
chr16 69346266 69346281 STAT1 JASPAR yes 69345259 1007 49387610
chr16 69346268 69346279 STAT3 JASPAR yes 69345259 1009 49387611
chr16 69346309 69346328 CTCF JASPAR yes 69345259 1050 49387612
chr16 69346322 69346329 CEBPA TRANSFAC yes 69345259 1063 49387613
chr16 69346327 69346331 LFA1 TRANSFAC yes 69345259 1068 49387614
SNPs associated with VPS4A[ENSG00000132612.14], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 69223549 rs11645913 G A 121710 Esophagus 0.08104 4504622
chr16 69446526 rs153052 G A 87577 Heart 0.156023 4505660
chr16 68764204 rs181758436 C A 581055 Spleen 0.157555 4502272
chr16 69128247 rs184558637 C A 217012 Uterus 0.965321 4504309
chr16 70044349 rs188732948 A C 685400 Thyroid 0.0102174 4509078
chr16 69424135 rs12919664 T C 65186 Stomach 0.164554 4505415
chr16 69346752 rs9927130 A G 0 Adrenal 0.00108452 4505227
Details of VPS4A[ENSG00000132612.14]
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Genomic Location chr16:69345259-69358949[+]
TSS 69345259
Gene Name VPS4A
Ensembl ID ENSG00000132612.14
ENTREZID 27183
Uniprot
Q9UN37
A0A024R705
Protein Name
VPS4A protein
Vacuolar protein sorting 4A
Vacuolar protein sorting-associated protein 4A
Expression levels of VPS4A[ENSG00000132612.14]
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