EnhancerDB
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Enhancers that regulate MSI1[ENSG00000135097.2]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 120710425 120716755 enh15044 120806983 90228
Placenta Brain (SK-N-MC)
chr12 120716965 120734448 enh2637 120806983 72535
Prostate (PC-3) Prostate (RWPE1) Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Uterus Epithelial (MCF-7)
chr12 120728531 120728703 vista15120 120806983 78280
VISTA
chr12 120752605 120758355 enh99042 120806983 48628
Pancreas (Panc1) Uterus
chr12 120797685 120801835 enh51423 120806983 5148
Large Intestine
chr12 120803895 120804280 vista15121 120806983 2703
VISTA
chr12 120816371 120821842 enh51424 120806983 9388
Colon (HCT116) Large Intestine Heart
chr12 120825005 120829155 enh75189 120806983 18022
Muscle (A673)
chr12 120829885 120834775 enh15045 120806983 22902
Large Intestine Stomach Placenta Lung (PC-9) Pancreas Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 120835485 120842285 enh68299 120806983 28502
Neural Stem Cells (H9) Lung (PC-9)
chr12 120835592 120835965 vista15122 120806983 28609
VISTA
chr12 120849725 120854103 enh51425 120806983 42742
Heart Large Intestine Pancreas Uterus Stomach
chr12 120851941 120852093 vista15123 120806983 44958
VISTA
chr12 120856004 120856198 vista15124 120806983 49021
VISTA
chr12 120864745 120870475 enh51426 120806983 57762
Large Intestine
chr12 120906143 120906276 vista15125 120806983 99160
VISTA
Transcript facotrs that regulate MSI1[ENSG00000135097.2]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 120803451 120803947 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 120806983 3036 108063441
chr12 120803601 120803941 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 120806983 3042 108063442
chr12 120803630 120803966 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 120806983 3017 108063443
chr12 120803653 120803933 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 120806983 3050 108063444
chr12 120803921 120803925 ESR1 TRANSFAC yes 120806983 3058 82487703
chr12 120803922 120803932 SREBF2 JASPAR yes 120806983 3051 82487704
chr12 120803941 120803952 GCM1 JASPAR yes 120806983 3031 82487705
chr12 120803942 120803952 GCM2 JASPAR yes 120806983 3031 82487706
chr12 120803950 120803962 ZBTB7A JASPAR yes 120806983 3021 82487707
chr12 120803957 120803962 ATF1 TRANSFAC yes 120806983 3021 82487708
chr12 120803972 120803987 NFYB JASPAR yes 120806983 2996 82487709
chr12 120803974 120803990 NFYA JASPAR yes 120806983 2993 82487710
chr12 120803975 120803993 NFYA JASPAR yes 120806983 2990 82487711
chr12 120803979 120803983 H1TF2 TRANSFAC yes 120806983 3000 82487712
chr12 120803979 120803983 NFE TRANSFAC yes 120806983 3000 82487713
chr12 120803979 120803983 SRF TRANSFAC yes 120806983 3000 82487714
chr12 120803988 120803993 ETS2 TRANSFAC yes 120806983 2990 82487715
chr12 120803996 120804000 NFE TRANSFAC yes 120806983 2983 82487716
chr12 120803996 120804001 GATA1 TRANSFAC yes 120806983 2982 82487717
chr12 120803996 120804002 GATA3 JASPAR yes 120806983 2981 82487718
chr12 120804012 120804017 ETS2 TRANSFAC yes 120806983 2966 82487719
chr12 120804077 120804089 EHF JASPAR yes 120806983 2894 82487720
chr12 120804112 120804133 REST JASPAR yes 120806983 2850 82487721
chr12 120804116 120804120 NFE TRANSFAC yes 120806983 2863 82487722
chr12 120804138 120804149 FOXH1 JASPAR yes 120806983 2834 82487723
chr12 120804142 120804148 ZNF354C JASPAR yes 120806983 2835 82487724
chr12 120804152 120804156 LFA1 TRANSFAC yes 120806983 2827 82487725
chr12 120804168 120804178 NFIA JASPAR yes 120806983 2805 82487726
chr12 120804170 120804176 NFIC JASPAR yes 120806983 2807 82487727
chr12 120804177 120804191 PLAG1 JASPAR yes 120806983 2792 82487728
chr12 120804182 120804197 TFAP2C JASPAR yes 120806983 2786 82487729
chr12 120804185 120804196 EBF1 JASPAR yes 120806983 2787 82487730
chr12 120804211 120804215 YY1 TRANSFAC yes 120806983 2768 82487731
chr12 120804214 120804225 E2F4 JASPAR yes 120806983 2758 82487732
chr12 120804214 120804225 E2F6 JASPAR yes 120806983 2758 82487733
chr12 120804214 120804228 E2F7 JASPAR yes 120806983 2755 82487734
chr12 120804215 120804226 E2F1 JASPAR yes 120806983 2757 82487735
chr12 120804225 120804240 STAT2 JASPAR yes 120806983 2743 82487736
chr12 120804226 120804240 STAT1 JASPAR yes 120806983 2743 82487737
chr12 120804227 120804239 IRF1 JASPAR yes 120806983 2744 82487738
chr12 120804231 120804242 FOXH1 JASPAR yes 120806983 2741 82487739
chr12 120804233 120804246 EOMES JASPAR yes 120806983 2737 82487740
chr12 120804235 120804245 TBR1 JASPAR yes 120806983 2738 82487741
chr12 120804235 120804246 TBX2 JASPAR yes 120806983 2737 82487742
chr12 120804237 120804245 TBX5 JASPAR yes 120806983 2738 82487743
chr12 120804241 120804261 TP53 JASPAR yes 120806983 2722 82487744
chr12 120804247 120804267 TP53 JASPAR yes 120806983 2716 82487745
chr12 120804254 120804275 ZNF263 JASPAR yes 120806983 2708 82487746
chr12 120804268 120804280 E2F8 JASPAR yes 120806983 2703 82487747
SNPs associated with MSI1[ENSG00000135097.2], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 120688659 rs57857987 G GCCC,GT,GTC,GTCC 90474 Esophagus 0.233647 2944844
chr12 120850968 rs796866909 GA G 43985 Esophagus 0.000222488 2945984
chr12 120818122 rs60019116 T TTTG 11139 Heart 0.0840373 2945693
chr12 120752722 rs12299143 T C 26411 Thyroid 0.0489666 2945478
Details of MSI1[ENSG00000135097.2]
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Genomic Location chr12:120779133-120806983[-]
TSS 120806983
Gene Name MSI1
Ensembl ID ENSG00000135097.2
ENTREZID 4440
Uniprot
O43347
Protein Name
RNA-binding protein Musashi homolog 1
Expression levels of MSI1[ENSG00000135097.2]
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