EnhancerDB
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Enhancers that regulate TRAFD1[ENSG00000135148.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 112464061 112464211 vista14916 112563305 99094
VISTA
chr12 112519885 112524235 enh2608 112563305 39070
Cervix (HeLa-S3) Esophagus Astrocyte Blood (Karpas-422) Lung (PC-9) Epithelial (MCF-7)
chr12 112529504 112529724 vista14917 112563305 33581
VISTA
chr12 112534496 112534670 vista14918 112563305 28635
VISTA
chr12 112539730 112543975 enh68276 112563305 19330
Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 112545862 112545946 vista14919 112563305 17359
VISTA
chr12 112547242 112557795 enh14998 112563305 5510
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Pancreas Thymus Epithelial (MCF-7)
chr12 112554455 112554606 vista14920 112563305 8699
VISTA
chr12 112566952 112567278 vista14921 112563305 3647
VISTA
chr12 112569313 112569455 vista14922 112563305 6008
VISTA
chr12 112572925 112577155 enh80389 112563305 9620
Prostate (PC-3) Lung (PC-9) Epithelial (MCF-7)
chr12 112633664 112633952 vista14923 112563305 70359
VISTA
chr12 112634065 112638215 enh95457 112563305 70760
Ovary
Transcript facotrs that regulate TRAFD1[ENSG00000135148.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 112566961 112566966 MYB TRANSFAC yes 112563305 3656 82478343
chr12 112566961 112566979 MAFF JASPAR yes 112563305 3656 82478344
chr12 112566963 112566978 MAFK JASPAR yes 112563305 3658 82478345
chr12 112566984 112566989 SP1 TRANSFAC yes 112563305 3679 82478346
chr12 112566991 112567012 IRF1 JASPAR yes 112563305 3686 82478347
chr12 112566992 112567013 IRF1 JASPAR yes 112563305 3687 82478348
chr12 112566994 112567015 IRF1 JASPAR yes 112563305 3689 82478349
chr12 112566995 112567016 IRF1 JASPAR yes 112563305 3690 82478350
chr12 112566996 112567011 FOXP1 JASPAR yes 112563305 3691 82478351
chr12 112566996 112567017 IRF1 JASPAR yes 112563305 3691 82478352
chr12 112566997 112567012 FOXP1 JASPAR yes 112563305 3692 82478353
chr12 112566997 112567018 IRF1 JASPAR yes 112563305 3692 82478354
chr12 112566998 112567013 FOXP1 JASPAR yes 112563305 3693 82478355
chr12 112566998 112567019 IRF1 JASPAR yes 112563305 3693 82478356
chr12 112566999 112567014 FOXP1 JASPAR yes 112563305 3694 82478357
chr12 112566999 112567020 IRF1 JASPAR yes 112563305 3694 82478358
chr12 112567000 112567015 FOXP1 JASPAR yes 112563305 3695 82478359
chr12 112567000 112567021 IRF1 JASPAR yes 112563305 3695 82478360
chr12 112567001 112567016 FOXP1 JASPAR yes 112563305 3696 82478361
chr12 112567001 112567022 IRF1 JASPAR yes 112563305 3696 82478362
chr12 112567002 112567017 FOXP1 JASPAR yes 112563305 3697 82478363
chr12 112567002 112567023 IRF1 JASPAR yes 112563305 3697 82478364
chr12 112567003 112567018 FOXP1 JASPAR yes 112563305 3698 82478365
chr12 112567003 112567024 IRF1 JASPAR yes 112563305 3698 82478366
chr12 112567004 112567019 FOXP1 JASPAR yes 112563305 3699 82478367
chr12 112567005 112567020 FOXP1 JASPAR yes 112563305 3700 82478368
chr12 112567006 112567021 FOXP1 JASPAR yes 112563305 3701 82478369
chr12 112567007 112567022 FOXP1 JASPAR yes 112563305 3702 82478370
chr12 112567008 112567023 FOXP1 JASPAR yes 112563305 3703 82478371
chr12 112567009 112567024 FOXP1 JASPAR yes 112563305 3704 82478372
chr12 112567010 112567025 FOXP1 JASPAR yes 112563305 3705 82478373
chr12 112567011 112567026 FOXP1 JASPAR yes 112563305 3706 82478374
chr12 112567039 112567043 NFE TRANSFAC yes 112563305 3734 82478375
chr12 112567054 112567072 RARA JASPAR yes 112563305 3749 82478376
chr12 112567069 112567085 SOX8 JASPAR yes 112563305 3764 82478377
chr12 112567086 112567104 RARA JASPAR yes 112563305 3781 82478378
chr12 112567106 112567114 NR4A2 JASPAR yes 112563305 3801 82478379
chr12 112567137 112567149 ZBTB7A JASPAR yes 112563305 3832 82478380
chr12 112567139 112567154 SCRT1 JASPAR yes 112563305 3834 82478381
chr12 112567143 112567152 SNAI2 JASPAR yes 112563305 3838 82478382
chr12 112567143 112567153 FIGLA JASPAR yes 112563305 3838 82478383
chr12 112567143 112567153 ID4 JASPAR yes 112563305 3838 82478384
chr12 112567143 112567153 TCF3 JASPAR yes 112563305 3838 82478385
chr12 112567143 112567153 TCF4 JASPAR yes 112563305 3838 82478386
chr12 112567145 112567154 ZEB1 JASPAR yes 112563305 3840 82478387
chr12 112567146 112567154 TBX5 JASPAR yes 112563305 3841 82478388
chr12 112567166 112567181 HNF1A JASPAR yes 112563305 3861 82478389
chr12 112567167 112567180 HNF1B JASPAR yes 112563305 3862 82478390
chr12 112567195 112567206 CEBPB JASPAR yes 112563305 3890 82478391
chr12 112567198 112567210 YY1 JASPAR yes 112563305 3893 82478392
SNPs associated with TRAFD1[ENSG00000135148.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 113104227 rs149743112 T C 512820 Heart 0.207093 2905571
chr12 111867433 rs151151099 C T 695872 Pancreas 0.307188 2902375
chr12 113500849 rs73427732 C T 909442 Breast 0.148204 2907296
chr12 113507085 rs138057258 C T 915678 Stomach 0.252576 2907374
chr12 111835545 rs7967514 G A 727760 Adrenal 0.0199303 2902124
Details of TRAFD1[ENSG00000135148.7]
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Genomic Location chr12:112563305-112591407[+]
TSS 112563305
Gene Name TRAFD1
Ensembl ID ENSG00000135148.7
ENTREZID 10906
Uniprot
O14545
A0A024RBK4
Protein Name
isoform CRA_a
Alternative protein TRAFD1
TRAF-type zinc finger domain containing 1
TRAF-type zinc finger domain-containing protein 1
Expression levels of TRAFD1[ENSG00000135148.7]
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