EnhancerDB
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Enhancers that regulate CKAP4[ENSG00000136026.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 106597245 106601395 enh101325 106698057 96662
Thyroid
chr12 106610166 106610424 vista14761 106698057 87633
VISTA
chr12 106615985 106623736 enh14960 106698057 74321
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Ovary Esophagus Blood (T-cell) Placenta Uterus Thymus Stomach
chr12 106621316 106621679 vista14762 106698057 76378
VISTA
chr12 106626405 106630555 enh29960 106698057 67502
Astrocyte
chr12 106634179 106646255 enh64632 106698057 51802
Uterus Heart
chr12 106640032 106640193 vista14763 106698057 57864
VISTA
chr12 106642668 106643242 vista14764 106698057 54815
VISTA
chr12 106663465 106670035 enh62307 106698057 28022
Esophagus Liver (HepG2) Brain (SK-N-MC) Stomach
chr12 106663801 106663878 vista14765 106698057 34179
VISTA
chr12 106664099 106664223 vista14766 106698057 33834
VISTA
chr12 106671985 106687355 enh29961 106698057 10702
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Lung (PC-9) Pancreas (Panc1) Heart
chr12 106673820 106674177 vista14767 106698057 23880
VISTA
chr12 106682328 106682503 vista14768 106698057 15554
VISTA
chr12 106694592 106694855 vista14769 106698057 3202
VISTA
chr12 106724425 106728575 enh2582 106698057 26368
Blood (Karpas-422)
chr12 106734765 106738975 enh29962 106698057 36708
Skin (Keratinocyte) Cervix (HeLa-S3) Large Intestine Ovary Astrocyte Pancreas Muscle (Myotube) Uterus Stomach
chr12 106778085 106783195 enh14961 106698057 80028
Placenta Brain (SK-N-MC)
Transcript facotrs that regulate CKAP4[ENSG00000136026.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 106694154 106694633 ZNF274 GTRD no Cervix (HeLa-S3) 106698057 3424 108056092
chr12 106694345 106694621 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 106698057 3436 108056093
chr12 106694548 106694808 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 106698057 3249 108056094
chr12 106694552 106694832 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 106698057 3225 108056095
chr12 106694645 106694657 NHLH1 JASPAR yes 106698057 3400 82471129
chr12 106694646 106694656 MSC JASPAR yes 106698057 3401 82471130
chr12 106694646 106694656 NHLH1 JASPAR yes 106698057 3401 82471131
chr12 106694653 106694657 ESR1 TRANSFAC yes 106698057 3400 82471132
chr12 106694654 106694664 SREBF2 JASPAR yes 106698057 3393 82471133
chr12 106694659 106694680 REST JASPAR yes 106698057 3377 82471134
chr12 106694664 106694668 TEAD2 TRANSFAC yes 106698057 3389 82471135
chr12 106694664 106694669 TBP TRANSFAC yes 106698057 3388 82471136
chr12 106694680 106694691 FOS JASPAR yes 106698057 3366 82471137
chr12 106694680 106694691 FOSL1 JASPAR yes 106698057 3366 82471138
chr12 106694680 106694691 JUND JASPAR yes 106698057 3366 82471139
chr12 106694680 106694691 NFE2 JASPAR yes 106698057 3366 82471140
chr12 106694681 106694690 JDP2 JASPAR yes 106698057 3367 82471141
chr12 106694681 106694692 FOSL2 JASPAR yes 106698057 3365 82471142
chr12 106694681 106694692 JUNB JASPAR yes 106698057 3365 82471143
chr12 106694681 106694695 JUN JASPAR yes 106698057 3362 82471144
chr12 106694681 106694699 ESR2 JASPAR yes 106698057 3358 82471145
chr12 106694690 106694694 ESR1 TRANSFAC yes 106698057 3363 82471146
chr12 106694690 106694701 USF1 JASPAR yes 106698057 3356 82471147
chr12 106694690 106694701 USF2 JASPAR yes 106698057 3356 82471148
chr12 106694691 106694698 USF2 TRANSFAC yes 106698057 3359 82471149
chr12 106694693 106694698 USF2 TRANSFAC yes 106698057 3359 82471150
chr12 106694698 106695070 TCF7L2 GTRD no Colon (HCT116) 106698057 2987 108056096
chr12 106694719 106694728 SRY JASPAR yes 106698057 3329 82471151
chr12 106694726 106694733 NKX3-1 JASPAR yes 106698057 3324 82471152
chr12 106694740 106694746 SOX10 JASPAR yes 106698057 3311 82471153
chr12 106694747 106694750 MYB TRANSFAC yes 106698057 3307 82471154
chr12 106694747 106694761 SPIC JASPAR yes 106698057 3296 82471155
chr12 106694748 106694761 ELF1 JASPAR yes 106698057 3296 82471156
chr12 106694749 106694755 SOX10 JASPAR yes 106698057 3302 82471157
chr12 106694751 106694762 FLI1 JASPAR yes 106698057 3295 82471158
chr12 106694752 106694757 ETS2 TRANSFAC yes 106698057 3300 82471159
chr12 106694752 106694760 FEV JASPAR yes 106698057 3297 82471160
chr12 106694753 106694760 SPI1 JASPAR yes 106698057 3297 82471161
chr12 106694765 106694777 HES5 JASPAR yes 106698057 3280 82471162
chr12 106694765 106694777 PKNOX1 JASPAR yes 106698057 3280 82471163
chr12 106694765 106694777 PKNOX2 JASPAR yes 106698057 3280 82471164
chr12 106694765 106694777 TGIF1 JASPAR yes 106698057 3280 82471165
chr12 106694765 106694777 TGIF2 JASPAR yes 106698057 3280 82471166
chr12 106694767 106694777 MAX JASPAR yes 106698057 3280 82471167
chr12 106694769 106694778 JDP2 JASPAR yes 106698057 3279 82471168
chr12 106694787 106694798 STAT1 JASPAR yes 106698057 3259 82471169
chr12 106694829 106694849 RREB1 JASPAR yes 106698057 3208 82471170
chr12 106694848 106694854 YY1 JASPAR yes 106698057 3203 82471171
SNPs associated with CKAP4[ENSG00000136026.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 106639793 rs149853104 GC G 0 Esophagus 0.108426 2877730
chr12 106100610 rs12308026 G C 531045 Heart 0.0791008 2872792
chr12 106374520 rs11613535 G A 257135 Breast 0.275451 2875192
chr12 106142981 rs10861495 G A 488674 Spleen 0.186271 2873296
chr12 106126680 rs144583916 T A 504975 Ovary 0.55959 2873033
chr12 106477086 rs146585302 C T 154569 Uterus 0.492689 2875946
chr12 105794468 rs141134921 A C,G 837187 Thyroid 0.137073 2870846
chr12 107447642 rs76811392 A G 749585 Liver 0.194739 2880313
chr12 106379960 rs140805575 A T 251695 Stomach 0.0101489 2875277
Details of CKAP4[ENSG00000136026.9]
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Genomic Location chr12:106631655-106698057[-]
TSS 106698057
Gene Name CKAP4
Ensembl ID ENSG00000136026.9
ENTREZID 10970
Uniprot
Q07065
A0A024RBH2
Protein Name
isoform CRA_c
CKAP4 protein
Cytoskeleton-associated protein 4
Cytoskeleton-associated protein 4
Expression levels of CKAP4[ENSG00000136026.9]
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