EnhancerDB
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Enhancers that regulate LRRC49[ENSG00000137821.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 71031299 71046793 enh31479 71145578 98785
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr15 71047994 71053355 enh64875 71145578 92223
Liver (HepG2) Heart
chr15 71061124 71101935 enh16295 71145578 43643
Liver Astrocyte Colon (HCT116) Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr15 71078596 71078640 vista20586 71145578 66938
VISTA
chr15 71084406 71084742 vista20587 71145578 60836
VISTA
chr15 71102485 71110170 enh81023 71145578 35408
Prostate (PC-3) Epithelial (MCF-7)
chr15 71115426 71121412 enh16296 71145578 24166
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr15 71124285 71128435 enh109677 71145578 17143
Stomach
chr15 71126164 71126470 vista20588 71145578 19108
VISTA
chr15 71129805 71133955 enh110853 71145578 11623
Cervix (HeLa-S3)
chr15 71144876 71145062 vista20589 71145578 516
VISTA
chr15 71149072 71149436 vista20590 71145578 3494
VISTA
chr15 71153667 71164886 enh31480 71145578 8089
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
chr15 71155799 71156069 vista20591 71145578 10221
VISTA
chr15 71176892 71177111 vista20592 71145578 31314
VISTA
chr15 71233405 71237855 enh101442 71145578 87827
Thyroid
Transcript facotrs that regulate LRRC49[ENSG00000137821.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 71144886 71144899 POU2F2 JASPAR yes 71145578 679 70554402
chr15 71144886 71144900 POU1F1 JASPAR yes 71145578 678 70554403
chr15 71144887 71144891 YY1 TRANSFAC yes 71145578 687 70554404
chr15 71144887 71144899 POU3F1 JASPAR yes 71145578 679 70554405
chr15 71144887 71144899 POU3F2 JASPAR yes 71145578 679 70554406
chr15 71144887 71144900 POU3F3 JASPAR yes 71145578 678 70554407
chr15 71144888 71144900 POU2F1 JASPAR yes 71145578 678 70554408
chr15 71144889 71144898 POU5F1B JASPAR yes 71145578 680 70554409
chr15 71144890 71144898 FOXL1 JASPAR yes 71145578 680 70554410
chr15 71144896 71144911 SOX21 JASPAR yes 71145578 667 70554411
chr15 71144937 71144949 PKNOX1 JASPAR yes 71145578 629 70554412
chr15 71144937 71144949 PKNOX2 JASPAR yes 71145578 629 70554413
chr15 71144937 71144949 TGIF1 JASPAR yes 71145578 629 70554414
chr15 71144937 71144949 TGIF2 JASPAR yes 71145578 629 70554415
chr15 71144943 71144947 NFE TRANSFAC yes 71145578 631 70554416
chr15 71144947 71144958 FOSL2 JASPAR yes 71145578 620 70554417
chr15 71144947 71144958 JUNB JASPAR yes 71145578 620 70554418
chr15 71144948 71144959 FOSL1 JASPAR yes 71145578 619 70554419
chr15 71144949 71144956 JUN TRANSFAC yes 71145578 622 70554420
chr15 71144965 71144969 YY1 TRANSFAC yes 71145578 609 70554421
chr15 71144971 71144985 MTF1 JASPAR yes 71145578 593 70554422
chr15 71144983 71144993 NFIA JASPAR yes 71145578 585 70554423
chr15 71144984 71144993 NFIX JASPAR yes 71145578 585 70554424
chr15 71144985 71144991 NFIC JASPAR yes 71145578 587 70554425
chr15 71144985 71144999 TLX1 JASPAR yes 71145578 579 70554426
chr15 71144986 71145000 TLX1 JASPAR yes 71145578 578 70554427
chr15 71144995 71145005 BARHL2 JASPAR yes 71145578 573 70554428
chr15 71144996 71145009 DUXA JASPAR yes 71145578 569 70554429
chr15 71144997 71145008 DUX4 JASPAR yes 71145578 570 70554430
chr15 71145012 71145028 POU4F2 JASPAR yes 71145578 550 70554431
chr15 71145012 71145028 POU4F3 JASPAR yes 71145578 550 70554432
chr15 71145015 71145019 YY1 TRANSFAC yes 71145578 559 70554433
chr15 71145018 71145022 TEAD2 TRANSFAC yes 71145578 556 70554434
chr15 71145018 71145023 TBP TRANSFAC yes 71145578 555 70554435
chr15 71145032 71145036 NFE TRANSFAC yes 71145578 542 70554436
chr15 71145032 71145037 GATA1 TRANSFAC yes 71145578 541 70554437
chr15 71145032 71145038 GATA3 JASPAR yes 71145578 540 70554438
chr15 71145039 71145045 SOX10 JASPAR yes 71145578 533 70554439
chr15 71145055 71145059 H4TF2 TRANSFAC yes 71145578 519 70554440
chr15 71148939 71149443 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3361 108153845
chr15 71149034 71149498 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3456 108153846
chr15 71149076 71149090 PLAG1 JASPAR yes 71145578 3498 70554441
chr15 71149077 71149481 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3499 108153847
chr15 71149082 71149093 E2F6 JASPAR yes 71145578 3504 70554442
chr15 71149083 71149539 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3505 108153848
chr15 71149085 71149441 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 71145578 3507 108153849
chr15 71149086 71149091 ETS2 TRANSFAC yes 71145578 3508 70554443
chr15 71149100 71149584 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 71145578 3522 108153850
chr15 71149101 71149471 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3523 108153851
chr15 71149101 71149497 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3523 108153852
chr15 71149106 71149112 LEF1 TRANSFAC yes 71145578 3528 70554444
chr15 71149106 71149112 SOX10 JASPAR yes 71145578 3528 70554445
chr15 71149127 71149475 CEBPB UCSC Txn Factor no Conserved 71145578 3549 108153853
chr15 71149127 71149475 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3549 108153854
chr15 71149130 71149514 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3552 108153855
chr15 71149144 71149311 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3566 108153856
chr15 71149150 71149160 MYF6 JASPAR yes 71145578 3572 70554446
chr15 71149156 71149416 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3578 108153857
chr15 71149163 71149493 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3585 108153858
chr15 71149166 71149172 LEF1 TRANSFAC yes 71145578 3588 70554447
chr15 71149166 71149172 TCF4 TRANSFAC yes 71145578 3588 70554448
chr15 71149168 71149488 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3590 108153859
chr15 71149178 71149189 GCM1 JASPAR yes 71145578 3600 70554449
chr15 71149178 71149193 RUNX2 JASPAR yes 71145578 3600 70554450
chr15 71149179 71149189 GCM2 JASPAR yes 71145578 3601 70554451
chr15 71149189 71149525 EP300 UCSC Txn Factor no Conserved 71145578 3611 108153860
chr15 71149193 71149423 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3615 108153861
chr15 71149194 71149198 YY1 TRANSFAC yes 71145578 3616 70554452
chr15 71149204 71149548 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3626 108153862
chr15 71149207 71149487 JUND UCSC Txn Factor no Conserved 71145578 3629 108153863
chr15 71149207 71149487 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 71145578 3629 108153864
chr15 71149220 71149456 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3642 108153865
chr15 71149231 71149249 IRF2 JASPAR yes 71145578 3653 70554453
chr15 71149232 71149253 IRF1 JASPAR yes 71145578 3654 70554454
chr15 71149234 71149249 STAT2 JASPAR yes 71145578 3656 70554455
chr15 71149235 71149404 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 71145578 3657 108153866
chr15 71149236 71149248 IRF1 JASPAR yes 71145578 3658 70554456
chr15 71149236 71149250 IRF7 JASPAR yes 71145578 3658 70554457
chr15 71149236 71149250 IRF8 JASPAR yes 71145578 3658 70554458
chr15 71149237 71149593 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3659 108153867
chr15 71149242 71149247 H4TF1 TRANSFAC yes 71145578 3664 70554459
chr15 71149244 71149259 HSF1 JASPAR yes 71145578 3666 70554460
chr15 71149244 71149265 ZNF263 JASPAR yes 71145578 3666 70554461
chr15 71149245 71149258 HSF1 JASPAR yes 71145578 3667 70554462
chr15 71149245 71149258 HSF2 JASPAR yes 71145578 3667 70554463
chr15 71149245 71149258 HSF4 JASPAR yes 71145578 3667 70554464
chr15 71149254 71149564 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 71145578 3676 108153868
chr15 71149258 71149269 EBF1 JASPAR yes 71145578 3680 70554465
chr15 71149259 71149265 MZF1 JASPAR yes 71145578 3681 70554466
chr15 71149259 71149429 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3681 108153869
chr15 71149267 71149443 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 71145578 3689 108153870
chr15 71149277 71149282 ETS2 TRANSFAC yes 71145578 3699 70554467
chr15 71149284 71149302 ESR1 JASPAR yes 71145578 3706 70554468
chr15 71149304 71149308 NFE TRANSFAC yes 71145578 3726 70554469
chr15 71149309 71149435 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3731 108153871
chr15 71149309 71149465 JUN UCSC Txn Factor no Conserved 71145578 3731 108153872
chr15 71149345 71149355 EVX1 JASPAR yes 71145578 3767 70554470
chr15 71149345 71149355 EVX2 JASPAR yes 71145578 3767 70554471
chr15 71149357 71149522 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71145578 3779 108153873
chr15 71149364 71149373 SRY JASPAR yes 71145578 3786 70554472
chr15 71149366 71149384 RARA JASPAR yes 71145578 3788 70554473
chr15 71149372 71149387 JUND JASPAR yes 71145578 3794 70554474
chr15 71149373 71149386 NR2F1 JASPAR yes 71145578 3795 70554475
chr15 71149375 71149390 JUND JASPAR yes 71145578 3797 70554476
chr15 71149376 71149389 JUN JASPAR yes 71145578 3798 70554477
chr15 71149377 71149385 CREB1 JASPAR yes 71145578 3799 70554478
chr15 71149391 71149400 HIC2 JASPAR yes 71145578 3813 70554479
chr15 71149391 71149401 NFIA JASPAR yes 71145578 3813 70554480
chr15 71149392 71149401 NFIX JASPAR yes 71145578 3814 70554481
chr15 71149393 71149399 NFIC JASPAR yes 71145578 3815 70554482
chr15 71149397 71149412 PRDM1 JASPAR yes 71145578 3819 70554483
chr15 71149397 71149412 STAT2 JASPAR yes 71145578 3819 70554484
chr15 71149398 71149412 STAT1 JASPAR yes 71145578 3820 70554485
chr15 71149403 71150461 ZBTB33 GTRD no Lung (A549) 71145578 3825 108153874
chr15 71149419 71149426 MEIS1 JASPAR yes 71145578 3841 70554486
chr15 71149419 71149427 MEIS2 JASPAR yes 71145578 3841 70554487
chr15 71149419 71149427 MEIS3 JASPAR yes 71145578 3841 70554488
chr15 71149428 71149432 YY1 TRANSFAC yes 71145578 3850 70554489
SNPs associated with LRRC49[ENSG00000137821.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 70281561 rs11632913 T A 864017 Esophagus 0.195225 4063439
chr15 70233705 rs141954500 A C 911873 Esophagus 0.0946644 4063001
chr15 70153709 rs79901964 C T 991869 Esophagus 0.218018 4062455
chr15 70435543 rs2415078 G A 710035 Heart 0.144508 4064771
chr15 71975954 rs7163924 C A 633540 Heart 0.282716 4078516
chr15 70756643 rs59513403 A G 388935 Pancreas 0.135526 4068589
chr15 71643083 rs60193973 G A 300669 Breast 0.128086 4075013
chr15 70217589 rs11639498 A G 927989 Spleen 0.240717 4062911
chr15 71126029 rs62019067 C A 19549 Ovary 0.385673 4071768
chr15 71087504 rs8036284 C T 58074 Uterus 0.351702 4071343
chr15 70510663 rs11638329 G A 634915 Liver 0.313816 4065815
chr15 71375818 rs75693070 C T 33404 Lung 0.0546738 4072399
Details of LRRC49[ENSG00000137821.7]
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Genomic Location chr15:71145578-71342414[+]
TSS 71145578
Gene Name LRRC49
Ensembl ID ENSG00000137821.7
ENTREZID 54839
Uniprot
H0YNV5
Q8IUZ0
B7Z7G0
Protein Name
isoform CRA_b
Leucine rich repeat containing 49
Leucine-rich repeat-containing protein 49
Expression levels of LRRC49[ENSG00000137821.7]
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