EnhancerDB
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Enhancers that regulate SLC5A6[ENSG00000138074.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr2 27335805 27339955 enh76226 27435826 95871
Muscle (A673)
chr2 27382505 27396655 enh5376 27435826 39171
Liver (HepG2) Ovary Blood (OCI-LY7) Blood (GM12878) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Uterus Stomach
chr2 27397765 27422095 enh5377 27435826 13731
Liver (HepG2) Brain (SK-N-MC) Liver Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Spleen Uterus Stomach
chr2 27432989 27433207 vista30773 27435826 2619
VISTA
chr2 27470068 27475335 enh60791 27435826 34242
Bone Marrow (K562) Ovary Blood (OCI-LY7)
chr2 27492605 27496755 enh65244 27435826 56779
Heart
chr2 27493313 27493366 vista30774 27435826 57487
VISTA
chr2 27511076 27518535 enh33153 27435826 75250
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Esophagus Astrocyte Blood (OCI-LY7) Stomach Colon (HCT116) Lung (PC-9) Heart
Transcript facotrs that regulate SLC5A6[ENSG00000138074.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr2 27432778 27433248 GATA3 UCSC Txn Factor no Conserved 27435826 2578 108431516
chr2 27433034 27433044 NFKB1 JASPAR yes 27435826 2782 22021985
chr2 27433036 27433047 ELF5 JASPAR yes 27435826 2779 22021986
chr2 27433036 27433048 EHF JASPAR yes 27435826 2778 22021987
chr2 27433036 27433048 ELF1 JASPAR yes 27435826 2778 22021988
chr2 27433036 27433048 ELF4 JASPAR yes 27435826 2778 22021989
chr2 27433036 27433049 ELF1 JASPAR yes 27435826 2777 22021990
chr2 27433036 27433050 SPIC JASPAR yes 27435826 2776 22021991
chr2 27433037 27433044 SPI1 JASPAR yes 27435826 2782 22021992
chr2 27433037 27433045 EHF JASPAR yes 27435826 2781 22021993
chr2 27433037 27433045 FEV JASPAR yes 27435826 2781 22021994
chr2 27433052 27433065 POU2F2 JASPAR yes 27435826 2761 22021995
chr2 27433052 27433066 POU1F1 JASPAR yes 27435826 2760 22021996
chr2 27433053 27433065 POU3F1 JASPAR yes 27435826 2761 22021997
chr2 27433053 27433066 POU3F3 JASPAR yes 27435826 2760 22021998
chr2 27433054 27433058 YY1 TRANSFAC yes 27435826 2768 22021999
chr2 27433054 27433066 POU2F1 JASPAR yes 27435826 2760 22022000
chr2 27433055 27433062 POU2F1 TRANSFAC yes 27435826 2764 22022001
chr2 27433055 27433062 POU2F2C TRANSFAC yes 27435826 2764 22022002
chr2 27433055 27433062 POU2F2 TRANSFAC yes 27435826 2764 22022003
chr2 27433055 27433064 POU3F4 JASPAR yes 27435826 2762 22022004
chr2 27433055 27433064 POU5F1B JASPAR yes 27435826 2762 22022005
chr2 27433056 27433068 PBX1 JASPAR yes 27435826 2758 22022006
chr2 27433057 27433071 POU4F1 JASPAR yes 27435826 2755 22022007
chr2 27433070 27433081 NFKB1 JASPAR yes 27435826 2745 22022008
chr2 27433070 27433083 NFKB1 JASPAR yes 27435826 2743 22022009
chr2 27433071 27433081 NFKB1 JASPAR yes 27435826 2745 22022010
chr2 27433084 27433090 YY1 JASPAR yes 27435826 2736 22022011
chr2 27433085 27433095 SREBF1 JASPAR yes 27435826 2731 22022012
chr2 27433094 27433109 TFAP2A JASPAR yes 27435826 2717 22022013
chr2 27433094 27433109 TFAP2C JASPAR yes 27435826 2717 22022014
chr2 27433097 27433108 EBF1 JASPAR yes 27435826 2718 22022015
chr2 27433097 27433108 TFAP2A JASPAR yes 27435826 2718 22022016
chr2 27433097 27433108 TFAP2B JASPAR yes 27435826 2718 22022017
chr2 27433097 27433108 TFAP2C JASPAR yes 27435826 2718 22022018
chr2 27433097 27433109 TFAP2C JASPAR yes 27435826 2717 22022019
chr2 27433098 27433107 TFAP2A JASPAR yes 27435826 2719 22022020
chr2 27433104 27433109 ETS2 TRANSFAC yes 27435826 2717 22022021
chr2 27433112 27433130 NR3C1 JASPAR yes 27435826 2696 22022022
chr2 27433121 27433132 NFE2L2 JASPAR yes 27435826 2694 22022023
chr2 27433165 27433173 FOXO3 JASPAR yes 27435826 2653 22022024
chr2 27433169 27433185 SOX8 JASPAR yes 27435826 2641 22022025
SNPs associated with SLC5A6[ENSG00000138074.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr2 27396047 rs78250434 C A 26408 Esophagus 1.51332e-05 5602593
chr2 27396047 rs78250434 C A 26408 Heart 0.00121704 5602593
chr2 26926994 rs111686382 G A 495461 Breast 0.145998 5600368
chr2 26721872 rs116683155 G A 700583 Uterus 0.418535 5599019
chr2 26832357 rs1275967 C T 590098 Stomach 0.343109 5599587
chr2 27412605 rs62128747 T C 9850 Adrenal 0.00138887 5602764
Details of SLC5A6[ENSG00000138074.10]
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Genomic Location chr2:27422455-27435826[-]
TSS 27435826
Gene Name SLC5A6
Ensembl ID ENSG00000138074.10
ENTREZID 8884
Uniprot
Q9Y289
Q9HD19
Protein Name
Sodium-dependent multivitamin transporter
Solute carrier family 5
Expression levels of SLC5A6[ENSG00000138074.10]
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