EnhancerDB
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Enhancers that regulate PCTP[ENSG00000141179.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 53735105 53755876 enh4477 53828340 72464
Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Esophagus Muscle (A673) Blood (Karpas-422) Spleen Uterus Stomach
chr17 53765378 53774475 enh60678 53828340 53865
Brain (SK-N-SH) Brain (SK-N-MC) Esophagus Blood (OCI-LY7) Muscle (A673) Spleen Stomach
chr17 53774925 53779075 enh101507 53828340 49265
Thyroid
chr17 53781285 53790059 enh62628 53828340 38281
Brain (SK-N-SH) Esophagus Muscle (A673) Breast Pancreas (Panc1) Stomach
chr17 53791541 53791562 vista25192 53828340 36778
VISTA
chr17 53800783 53805045 enh115636 53828340 23295
Brain (SK-N-SH)
chr17 53810067 53810185 vista25193 53828340 18155
VISTA
chr17 53817765 53822718 enh58768 53828340 5622
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Peripheral Blood (MM.1S) Lung (PC-9) Epithelial (MCF-7)
chr17 53837485 53844195 enh17232 53828340 9145
Liver (HepG2) Brain (SK-N-MC) Muscle (A673) Placenta Heart
chr17 53841262 53841496 vista25194 53828340 12922
VISTA
chr17 53859085 53864815 enh17233 53828340 30745
Bone Marrow (K562) Brain (SK-N-MC) Esophagus Lung Muscle (A673) Placenta Heart
chr17 53875650 53875676 vista25195 53828340 47310
VISTA
chr17 53889765 53896815 enh65054 53828340 61425
Pancreas Bone Marrow (K562) Heart
Transcript facotrs that regulate PCTP[ENSG00000141179.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 53822565 53824501 ZNF143 GTRD no Epithelial (MCF-7) 53828340 3839 21772876
chr17 53822656 53824044 ZNF143 GTRD no Epithelial (MCF-7) 53828340 4296 21772877
chr17 53822658 53824000 ZNF143 GTRD no Epithelial (MCF-7) 53828340 4340 21772878
chr17 53822659 53824111 ZNF143 GTRD no Epithelial (MCF-7) 53828340 4229 21772879
SNPs associated with PCTP[ENSG00000141179.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 53406570 rs78107556 T C 421770 Esophagus 0.323119 4938583
chr17 53102900 rs2787480 C T 725440 Breast 0.382302 4936992
chr17 53822314 rs2960083 C T 6026 Spleen 0.131391 4941686
chr17 53902820 rs989612 G A 0 Lung 0.0209836 4941985
chr17 53828706 rs890488 C G 0 Adrenal 0.424942 4941734
Details of PCTP[ENSG00000141179.9]
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Genomic Location chr17:53828340-53920191[+]
TSS 53828340
Gene Name PCTP
Ensembl ID ENSG00000141179.9
ENTREZID 58488
Uniprot
Q549N3
I3L3H0
I3L2M9
Q9UKL6
Protein Name
Alternative protein PCTP
Phosphatidylcholine transfer protein
Expression levels of PCTP[ENSG00000141179.9]
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