EnhancerDB
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Enhancers that regulate CCDC50[ENSG00000152492.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 190947285 190951435 enh113446 191046866 95431
Brain (SK-N-MC)
chr3 190951505 190959702 enh21226 191046866 87164
Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Placenta Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
chr3 190956161 190956506 vista43643 191046866 90360
VISTA
chr3 190957563 190957649 vista43644 191046866 89217
VISTA
chr3 190960125 190966735 enh61127 191046866 80131
Prostate (PC-3) Brain (SK-N-MC) Blood (OCI-LY7) Peripheral Blood (MM.1S) Lung (PC-9)
chr3 190976366 190980516 enh71045 191046866 66350
Neural Stem Cells (H9)
chr3 191006249 191010391 enh61128 191046866 36475
Blood (OCI-LY7)
chr3 191012989 191021177 enh61129 191046866 25689
Peripheral Blood (MM.1S) Blood (OCI-LY7) Blood (GM12878)
chr3 191018915 191018927 vista43645 191046866 27939
VISTA
chr3 191029185 191033335 enh54544 191046866 13531
Large Intestine
chr3 191049369 191049653 vista43646 191046866 2503
VISTA
chr3 191049905 191063115 enh77182 191046866 3039
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Muscle (A673) Lung (PC-9) Uterus Stomach
chr3 191064774 191076975 enh36268 191046866 17908
Prostate (PC-3) Esophagus Astrocyte Stomach Muscle (A673) Uterus Lung (PC-9) Neural Stem Cells (H9) Heart
chr3 191077371 191084687 enh71046 191046866 30505
Liver (HepG2) Neural Stem Cells (H9)
chr3 191092665 191096835 enh36269 191046866 45799
Astrocyte Prostate (PC-3)
chr3 191128665 191134315 enh36270 191046866 81799
Astrocyte
Transcript facotrs that regulate CCDC50[ENSG00000152492.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 191049382 191049386 ESR1 TRANSFAC yes 191046866 2516 71108241
chr3 191049390 191049405 JUND JASPAR yes 191046866 2524 71108242
chr3 191049393 191049408 JUND JASPAR yes 191046866 2527 71108243
chr3 191049394 191049407 JUN JASPAR yes 191046866 2528 71108244
chr3 191049403 191049407 NFE TRANSFAC yes 191046866 2537 71108245
chr3 191049407 191049413 LEF1 TRANSFAC yes 191046866 2541 71108246
chr3 191049407 191049413 SOX10 JASPAR yes 191046866 2541 71108247
chr3 191049407 191049418 FOXA1 JASPAR yes 191046866 2541 71108248
chr3 191049407 191049422 FOXA1 JASPAR yes 191046866 2541 71108249
chr3 191049408 191049419 FOXB1 JASPAR yes 191046866 2542 71108250
chr3 191049408 191049419 FOXC1 JASPAR yes 191046866 2542 71108251
chr3 191049408 191049420 FOXC2 JASPAR yes 191046866 2542 71108252
chr3 191049410 191049418 FOXO3 JASPAR yes 191046866 2544 71108253
chr3 191049411 191049418 FOXD2 JASPAR yes 191046866 2545 71108254
chr3 191049411 191049418 FOXI1 JASPAR yes 191046866 2545 71108255
chr3 191049411 191049418 FOXL1 JASPAR yes 191046866 2545 71108256
chr3 191049411 191049418 FOXO4 JASPAR yes 191046866 2545 71108257
chr3 191049411 191049418 FOXO6 JASPAR yes 191046866 2545 71108258
chr3 191049411 191049418 FOXP3 JASPAR yes 191046866 2545 71108259
chr3 191049411 191049419 FOXD1 JASPAR yes 191046866 2545 71108260
chr3 191049411 191049419 FOXG1 JASPAR yes 191046866 2545 71108261
chr3 191049411 191049419 FOXO3 JASPAR yes 191046866 2545 71108262
chr3 191049413 191049426 ZBTB18 JASPAR yes 191046866 2547 71108263
chr3 191049438 191049452 TCF7L2 JASPAR yes 191046866 2572 71108264
chr3 191049438 191049453 LEF1 JASPAR yes 191046866 2572 71108265
chr3 191049442 191049450 LEF1 TRANSFAC yes 191046866 2576 71108266
chr3 191049445 191049455 GABPA JASPAR yes 191046866 2579 71108267
chr3 191049445 191049456 FLI1 JASPAR yes 191046866 2579 71108268
chr3 191049446 191049451 ETS2 TRANSFAC yes 191046866 2580 71108269
chr3 191049446 191049454 FEV JASPAR yes 191046866 2580 71108270
chr3 191049447 191049454 SPI1 JASPAR yes 191046866 2581 71108271
chr3 191049464 191049476 TEAD1 JASPAR yes 191046866 2598 71108272
chr3 191049466 191049476 TEAD1 JASPAR yes 191046866 2600 71108273
chr3 191049466 191049476 TEAD4 JASPAR yes 191046866 2600 71108274
chr3 191049467 191049475 TEAD3 JASPAR yes 191046866 2601 71108275
chr3 191049491 191049506 LEF1 JASPAR yes 191046866 2625 71108276
chr3 191049492 191049506 TCF7L2 JASPAR yes 191046866 2626 71108277
chr3 191049519 191049529 HOXA13 JASPAR yes 191046866 2653 71108278
chr3 191049530 191049535 GATA2 JASPAR yes 191046866 2664 71108279
chr3 191049543 191049547 TEAD2 TRANSFAC yes 191046866 2677 71108280
chr3 191049545 191049548 MYB TRANSFAC yes 191046866 2679 71108281
chr3 191049551 191049559 LMX1A JASPAR yes 191046866 2685 71108282
chr3 191049551 191049559 LMX1B JASPAR yes 191046866 2685 71108283
chr3 191049551 191049559 NKX6-1 JASPAR yes 191046866 2685 71108284
chr3 191049551 191049559 NKX6-2 JASPAR yes 191046866 2685 71108285
chr3 191049551 191049559 VAX1 JASPAR yes 191046866 2685 71108286
chr3 191049551 191049559 VAX2 JASPAR yes 191046866 2685 71108287
chr3 191049551 191049559 VSX1 JASPAR yes 191046866 2685 71108288
chr3 191049551 191049559 VSX2 JASPAR yes 191046866 2685 71108289
chr3 191049574 191049577 MYB TRANSFAC yes 191046866 2708 71108290
chr3 191049584 191049597 POU3F3 JASPAR yes 191046866 2718 71108291
chr3 191049584 191049598 POU1F1 JASPAR yes 191046866 2718 71108292
chr3 191049585 191049597 POU3F2 JASPAR yes 191046866 2719 71108293
chr3 191049586 191049591 GATA2 JASPAR yes 191046866 2720 71108294
chr3 191049588 191049598 POU6F2 JASPAR yes 191046866 2722 71108295
chr3 191049589 191049599 ALX3 JASPAR yes 191046866 2723 71108296
chr3 191049589 191049599 EMX2 JASPAR yes 191046866 2723 71108297
chr3 191049589 191049599 ESX1 JASPAR yes 191046866 2723 71108298
chr3 191049589 191049599 GSX1 JASPAR yes 191046866 2723 71108299
chr3 191049589 191049599 GSX2 JASPAR yes 191046866 2723 71108300
chr3 191049589 191049599 HOXA2 JASPAR yes 191046866 2723 71108301
chr3 191049589 191049599 HOXB2 JASPAR yes 191046866 2723 71108302
chr3 191049589 191049599 HOXB3 JASPAR yes 191046866 2723 71108303
chr3 191049589 191049599 LBX2 JASPAR yes 191046866 2723 71108304
chr3 191049589 191049599 LHX2 JASPAR yes 191046866 2723 71108305
chr3 191049589 191049599 LHX6 JASPAR yes 191046866 2723 71108306
chr3 191049589 191049599 MEOX1 JASPAR yes 191046866 2723 71108307
chr3 191049589 191049599 MEOX2 JASPAR yes 191046866 2723 71108308
chr3 191049589 191049599 MIXL1 JASPAR yes 191046866 2723 71108309
chr3 191049589 191049599 NOTO JASPAR yes 191046866 2723 71108310
chr3 191049590 191049598 BSX JASPAR yes 191046866 2724 71108311
chr3 191049590 191049598 DLX6 JASPAR yes 191046866 2724 71108312
chr3 191049590 191049598 EN1 JASPAR yes 191046866 2724 71108313
chr3 191049590 191049598 ISX JASPAR yes 191046866 2724 71108314
chr3 191049590 191049598 LBX1 JASPAR yes 191046866 2724 71108315
chr3 191049590 191049598 LHX9 JASPAR yes 191046866 2724 71108316
chr3 191049590 191049598 LMX1A JASPAR yes 191046866 2724 71108317
chr3 191049590 191049598 LMX1B JASPAR yes 191046866 2724 71108318
chr3 191049590 191049598 NKX6-1 JASPAR yes 191046866 2724 71108319
chr3 191049590 191049598 NKX6-2 JASPAR yes 191046866 2724 71108320
chr3 191049590 191049598 PAX4 JASPAR yes 191046866 2724 71108321
chr3 191049590 191049598 PDX1 JASPAR yes 191046866 2724 71108322
chr3 191049590 191049598 PRRX1 JASPAR yes 191046866 2724 71108323
chr3 191049590 191049598 RAX2 JASPAR yes 191046866 2724 71108324
chr3 191049590 191049598 SHOX JASPAR yes 191046866 2724 71108325
chr3 191049590 191049598 UNCX JASPAR yes 191046866 2724 71108326
chr3 191049590 191049598 VAX1 JASPAR yes 191046866 2724 71108327
chr3 191049590 191049598 VAX2 JASPAR yes 191046866 2724 71108328
chr3 191049590 191049598 VSX1 JASPAR yes 191046866 2724 71108329
chr3 191049590 191049598 VSX2 JASPAR yes 191046866 2724 71108330
chr3 191049590 191049600 MEF2A JASPAR yes 191046866 2724 71108331
chr3 191049627 191049647 TP53 JASPAR yes 191046866 2761 71108332
chr3 191049629 191049642 ZBTB18 JASPAR yes 191046866 2763 71108333
chr3 191049631 191049646 TP53 JASPAR yes 191046866 2765 71108334
chr3 191049633 191049644 FOXA1 JASPAR yes 191046866 2767 71108335
chr3 191049633 191049648 FOXA1 JASPAR yes 191046866 2767 71108336
chr3 191049634 191049645 FOXC1 JASPAR yes 191046866 2768 71108337
chr3 191049634 191049646 FOXC2 JASPAR yes 191046866 2768 71108338
SNPs associated with CCDC50[ENSG00000152492.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 191047764 rs10580681 AGTAG A 0 Esophagus 4.86248e-06 7295857
chr3 191075656 rs13434281 G A 0 Esophagus 3.6104e-11 7296196
chr3 191050605 rs9826141 G A 0 Esophagus 2.90359e-16 7295884
chr3 191096051 rs7636707 C T 0 Heart 0.00038448 7296375
chr3 191046770 rs4687210 G A 96 Breast 0.00111551 7295831
chr3 191053583 rs73201630 C T 0 Uterus 0.00994226 7295920
chr3 191093475 rs4677730 T C 0 Thyroid 7.12655e-38 7296339
chr3 191073897 rs9985271 G A 0 Adrenal 0.00137057 7296180
Details of CCDC50[ENSG00000152492.9]
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Genomic Location chr3:191046866-191116459[+]
TSS 191046866
Gene Name CCDC50
Ensembl ID ENSG00000152492.9
ENTREZID 152137
Uniprot
Q8IVM0
Protein Name
Coiled-coil domain-containing protein 50
Expression levels of CCDC50[ENSG00000152492.9]
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