EnhancerDB
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Enhancers that regulate ABCA6[ENSG00000154262.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 67040465 67044933 enh65066 67138029 93096
Uterus Heart
chr17 67055729 67056007 vista25717 67138029 82022
VISTA
chr17 67064985 67071075 enh92751 67138029 66954
Liver (HepG2) Peripheral Blood (MM.1S) Stomach
chr17 67087525 67091675 enh91179 67138029 46354
Bone Marrow (K562)
chr17 67089514 67089753 vista25718 67138029 48276
VISTA
chr17 67095790 67095894 vista25719 67138029 42135
VISTA
chr17 67139403 67139524 vista25720 67138029 1374
VISTA
chr17 67169885 67174035 enh110900 67138029 31856
Cervix (HeLa-S3)
chr17 67172740 67173121 vista25721 67138029 34711
VISTA
chr17 67205913 67206151 vista25722 67138029 67884
VISTA
chr17 67229625 67235475 enh75937 67138029 91596
Bone Marrow (K562) Cervix (HeLa-S3) Brain (SK-N-MC) Muscle (A673) Uterus
Transcript facotrs that regulate ABCA6[ENSG00000154262.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 67139117 67139763 ZBTB33 GTRD no Brain (SK-N-SH) 67138029 1088 108287964
chr17 67139124 67140563 ZNF143 GTRD no Epithelial (MCF-7) 67138029 1095 108287965
chr17 67139133 67140838 ZBTB33 GTRD no Brain (SK-N-SH) 67138029 1104 108287966
chr17 67139158 67140418 ZNF143 GTRD no Epithelial (MCF-7) 67138029 1129 108287967
chr17 67139186 67140947 ZBTB33 GTRD no Lung (A549) 67138029 1157 108287968
chr17 67139187 67139881 ZBTB33 GTRD no Brain (SK-N-SH) 67138029 1158 108287969
chr17 67139220 67140768 ZBTB33 GTRD no Brain (SK-N-SH) 67138029 1191 108287970
chr17 67139266 67141095 ZBTB33 GTRD no Lung (A549) 67138029 1237 108287971
chr17 67139268 67140763 ZBTB33 GTRD no Brain (SK-N-SH) 67138029 1239 108287972
chr17 67139281 67139894 ZBTB33 GTRD no Brain (SK-N-SH) 67138029 1252 108287973
chr17 67139303 67140551 ZNF274 GTRD no Cervix (HeLa-S3) 67138029 1274 108287974
chr17 67139378 67139642 ZNF274 GTRD no Blood (GM12878) 67138029 1349 108287975
chr17 67139403 67139417 STAT1 JASPAR yes 67138029 1374 21283607
chr17 67139404 67139425 IRF1 JASPAR yes 67138029 1375 21283608
chr17 67139405 67139420 FOXP1 JASPAR yes 67138029 1376 21283609
chr17 67139406 67139421 PRDM1 JASPAR yes 67138029 1377 21283610
chr17 67139412 67139417 ETS2 TRANSFAC yes 67138029 1383 21283611
chr17 67139412 67139429 RXRA JASPAR yes 67138029 1383 21283612
chr17 67139423 67139433 RORA JASPAR yes 67138029 1394 21283613
chr17 67139425 67139431 PTF TRANSFAC yes 67138029 1396 21283614
chr17 67139428 67139439 ETV2 JASPAR yes 67138029 1399 21283615
chr17 67139431 67139438 SPIB JASPAR yes 67138029 1402 21283616
chr17 67139437 67139444 NKX3-1 JASPAR yes 67138029 1408 21283617
chr17 67139440 67139453 POU2F2 JASPAR yes 67138029 1411 21283618
chr17 67139440 67139454 POU1F1 JASPAR yes 67138029 1411 21283619
chr17 67139441 67139452 FOXC1 JASPAR yes 67138029 1412 21283620
chr17 67139442 67139446 YY1 TRANSFAC yes 67138029 1413 21283621
chr17 67139443 67139455 IRF1 JASPAR yes 67138029 1414 21283622
chr17 67139443 67139457 IRF7 JASPAR yes 67138029 1414 21283623
chr17 67139448 67139452 YY1 TRANSFAC yes 67138029 1419 21283624
chr17 67139459 67139470 FOXP2 JASPAR yes 67138029 1430 21283625
chr17 67139461 67139469 FOXO3 JASPAR yes 67138029 1432 21283626
chr17 67139465 67139470 ETS2 TRANSFAC yes 67138029 1436 21283627
chr17 67139466 67139477 NFIL3 JASPAR yes 67138029 1437 21283628
chr17 67139467 67139479 DBP JASPAR yes 67138029 1438 21283629
chr17 67139467 67139479 HLF JASPAR yes 67138029 1438 21283630
chr17 67139467 67139479 JDP2 JASPAR yes 67138029 1438 21283631
chr17 67139467 67139479 TEF JASPAR yes 67138029 1438 21283632
chr17 67139468 67139478 CEBPB JASPAR yes 67138029 1439 21283633
chr17 67139468 67139478 CEBPD JASPAR yes 67138029 1439 21283634
chr17 67139468 67139478 CEBPE JASPAR yes 67138029 1439 21283635
chr17 67139468 67139478 CEBPG JASPAR yes 67138029 1439 21283636
chr17 67139469 67139477 GMEB2 JASPAR yes 67138029 1440 21283637
chr17 67139469 67139480 NFIL3 JASPAR yes 67138029 1440 21283638
chr17 67139474 67140380 ZNF274 GTRD no Bone Marrow (K562) 67138029 1445 108287976
chr17 67139475 67140520 ZNF143 GTRD no Epithelial (MCF-7) 67138029 1446 108287977
chr17 67139484 67139498 E2F7 JASPAR yes 67138029 1455 21283639
chr17 67139485 67139497 E2F8 JASPAR yes 67138029 1456 21283640
chr17 67139487 67139493 MZF1 JASPAR yes 67138029 1458 21283641
chr17 67139495 67139510 JUND JASPAR yes 67138029 1466 21283642
chr17 67139496 67139509 JUN JASPAR yes 67138029 1467 21283643
chr17 67139502 67140524 ZBTB33 GTRD no Lung (A549) 67138029 1473 108287978
SNPs associated with ABCA6[ENSG00000154262.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 66562710 rs12603503 C G 512133 Esophagus 0.247694 5013911
chr17 66391826 rs12939053 C A 683017 Breast 0.225503 5012856
chr17 66834232 rs79148337 G C,T 240611 Spleen 0.28834 5016477
chr17 67370150 rs184675984 C G 232121 Uterus 0.46077 5018040
chr17 67170736 rs740520 A G 32707 Lung 0.297431 5017528
Details of ABCA6[ENSG00000154262.8]
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Genomic Location chr17:67074843-67138029[-]
TSS 67138029
Gene Name ABCA6
Ensembl ID ENSG00000154262.8
ENTREZID 23460
Uniprot
Q8N139
Protein Name
ABCA6 protein
ATP-binding cassette sub-family A member 6
Expression levels of ABCA6[ENSG00000154262.8]
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