EnhancerDB
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Enhancers that regulate SYVN1[ENSG00000162298.12]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr11 64837545 64841695 enh103538 64902004 60309
Peripheral Blood (MM.1S)
chr11 64866545 64871977 enh13995 64902004 30027
Esophagus Placenta Lung (PC-9) Pancreas Heart
chr11 64874285 64882815 enh1821 64902004 19189
Blood (Karpas-422)
chr11 64906145 64922795 enh1822 64902004 4141
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Breast Blood (Karpas-422) Lung (PC-9) Pancreas Spleen Uterus Heart
chr11 64916686 64916783 vista10585 64902004 14682
VISTA
chr11 64924672 64929975 enh13996 64902004 22668
Placenta Blood (OCI-LY7)
chr11 64934005 64939715 enh13997 64902004 32001
Placenta
chr11 64957705 64961855 enh96216 64902004 55701
Epithelial (MCF-7)
chr11 64963385 64969875 enh13998 64902004 61381
Placenta Lung (PC-9) Epithelial (MCF-7)
chr11 64977405 64995695 enh1823 64902004 75401
Bone Marrow (K562) Large Intestine Prostate (RWPE1) Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Uterus Blood (Karpas-422) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr11 64987523 64987676 vista10586 64902004 85519
VISTA
chr11 64997985 65002155 enh79911 64902004 95981
Prostate (PC-3) Lung (PC-9)
Transcript facotrs that regulate SYVN1[ENSG00000162298.12]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr11 64905276 64907929 TCF7L2 GTRD no Colon (HCT116) 64902004 3272 21490515
chr11 64905403 64906530 ZNF143 GTRD no Epithelial (MCF-7) 64902004 3399 21490516
chr11 64905418 64908077 ZNF143 GTRD no Epithelial (MCF-7) 64902004 3414 21490517
chr11 64905454 64906483 ZNF143 GTRD no Epithelial (MCF-7) 64902004 3450 21490518
chr11 64905681 64906512 ZNF143 GTRD no Epithelial (MCF-7) 64902004 3677 21490519
chr11 64905718 64906248 ZNF274 GTRD no Blood (GM12878) 64902004 3714 21490520
chr11 64905740 64906228 ZNF143 GTRD no Epithelial (MCF-7) 64902004 3736 21490521
chr11 64905954 64906401 ZNF274 GTRD no Cervix (HeLa-S3) 64902004 3950 21490522
chr11 64906011 64906813 TCF7L2 GTRD no Colon (HCT116) 64902004 4007 21490523
chr11 64906027 64906881 TCF7L2 GTRD no Colon (HCT116) 64902004 4023 21490524
chr11 64906244 64907448 TCF7L2 GTRD no Colon (HCT116) 64902004 4240 21490525
chr11 64906851 64907699 TCF7L2 GTRD no Colon (HCT116) 64902004 4847 21490526
chr11 64906898 64907273 ZNF274 GTRD no Blood (GM12878) 64902004 4894 21490527
SNPs associated with SYVN1[ENSG00000162298.12], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr11 64874262 rs3896078 C A,G 14990 Esophagus 0.295723 2043323
chr11 65886209 rs141624609 G T 984205 Heart 0.243332 2051120
chr11 65561368 rs501337 C A,G,T 659364 Heart 0.254429 2048698
chr11 64915042 rs1152639 A C 13038 Pancreas 0.384929 2043704
chr11 64583644 rs183652416 C G 305608 Breast 0.368917 2041980
chr11 64146518 rs61886927 G A 742734 Spleen 0.302317 2039864
chr11 65625464 rs117231452 G A 723460 Uterus 0.424406 2049255
chr11 64618768 rs10897532 T C 270484 Lung 0.266786 2042134
chr11 64742191 rs12797697 C T 147061 Stomach 0.235264 2042720
Details of SYVN1[ENSG00000162298.12]
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Genomic Location chr11:64889252-64902004[-]
TSS 64902004
Gene Name SYVN1
Ensembl ID ENSG00000162298.12
ENTREZID 84447
Uniprot
Q86TM6
Protein Name
E3 ubiquitin-protein ligase synoviolin
Expression levels of SYVN1[ENSG00000162298.12]
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