EnhancerDB
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Enhancers that regulate CHCHD4[ENSG00000163528.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 14087465 14091615 enh113145 14166370 74755
Brain (SK-N-MC)
chr3 14097309 14101459 enh63105 14166370 64911
Esophagus
chr3 14167210 14167731 vista40046 14166370 840
VISTA
chr3 14183807 14188515 enh115770 14166370 17437
Brain (SK-N-SH)
chr3 14227965 14232115 enh76873 14166370 61595
Muscle (A673)
chr3 14236465 14258535 enh20363 14166370 70095
Bone Marrow (K562) Liver Astrocyte Pancreas Uterus Kidney Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
chr3 14246419 14246703 vista40047 14166370 80049
VISTA
chr3 14257734 14258042 vista40048 14166370 91364
VISTA
chr3 14262645 14281189 enh20364 14166370 96275
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Esophagus Lung Blood (GM12878) Stomach Placenta Thyroid Lung (PC-9) Spleen Muscle (Myotube) Uterus Heart
Transcript facotrs that regulate CHCHD4[ENSG00000163528.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 14165410 14167668 POLR2A UCSC Txn Factor no Conserved 14166370 960 108528332
chr3 14166870 14167389 REST UCSC Txn Factor no Conserved 14166370 500 108528333
chr3 14167245 14167266 ZNF263 JASPAR yes 14166370 875 70941377
chr3 14167248 14167269 ZNF263 JASPAR yes 14166370 878 70941378
chr3 14167267 14167271 YY1 TRANSFAC yes 14166370 897 70941379
chr3 14167277 14167281 NFE TRANSFAC yes 14166370 907 70941380
chr3 14167282 14167287 SP1 TRANSFAC yes 14166370 912 70941381
chr3 14167286 14167292 SP1 TRANSFAC yes 14166370 916 70941382
chr3 14167286 14167296 SP1 JASPAR yes 14166370 916 70941383
chr3 14167289 14167299 SP1 JASPAR yes 14166370 919 70941384
chr3 14167291 14167611 JUND UCSC Txn Factor no Conserved 14166370 921 108528334
chr3 14167292 14167302 MZF1 JASPAR yes 14166370 922 70941385
chr3 14167292 14167304 INSM1 JASPAR yes 14166370 922 70941386
chr3 14167315 14167336 ZNF263 JASPAR yes 14166370 945 70941387
chr3 14167325 14167337 TFAP2A JASPAR yes 14166370 955 70941388
chr3 14167325 14167337 TFAP2B JASPAR yes 14166370 955 70941389
chr3 14167325 14167337 TFAP2C JASPAR yes 14166370 955 70941390
chr3 14167336 14167351 TFAP2A JASPAR yes 14166370 966 70941391
chr3 14167339 14167351 TFAP2A JASPAR yes 14166370 969 70941392
chr3 14167339 14167353 PLAG1 JASPAR yes 14166370 969 70941393
chr3 14167368 14167539 FOSL1 UCSC Txn Factor no Conserved 14166370 998 108528335
chr3 14167370 14167384 E2F7 JASPAR yes 14166370 1000 70941394
chr3 14167371 14167383 E2F8 JASPAR yes 14166370 1001 70941395
chr3 14167384 14167388 YY1 TRANSFAC yes 14166370 1014 70941396
chr3 14167446 14167460 JUN JASPAR yes 14166370 1076 70941397
chr3 14167449 14167460 FOSL2 JASPAR yes 14166370 1079 70941398
chr3 14167449 14167460 JUNB JASPAR yes 14166370 1079 70941399
chr3 14167449 14167462 NFKB1 JASPAR yes 14166370 1079 70941400
chr3 14167450 14167461 FOS JASPAR yes 14166370 1080 70941401
chr3 14167450 14167461 FOSL1 JASPAR yes 14166370 1080 70941402
chr3 14167450 14167461 JUND JASPAR yes 14166370 1080 70941403
chr3 14167450 14167461 NFE2 JASPAR yes 14166370 1080 70941404
chr3 14167451 14167458 JUN TRANSFAC yes 14166370 1081 70941405
chr3 14167451 14167460 JDP2 JASPAR yes 14166370 1081 70941406
chr3 14167451 14167462 FOSL2 JASPAR yes 14166370 1081 70941407
chr3 14167451 14167462 JUNB JASPAR yes 14166370 1081 70941408
chr3 14167451 14167465 JUN JASPAR yes 14166370 1081 70941409
chr3 14167453 14167474 ZNF263 JASPAR yes 14166370 1083 70941410
chr3 14167456 14167471 NR2C2 JASPAR yes 14166370 1086 70941411
chr3 14167461 14167471 MZF1 JASPAR yes 14166370 1091 70941412
chr3 14167464 14167470 SP1 TRANSFAC yes 14166370 1094 70941413
chr3 14167464 14167474 SP1 JASPAR yes 14166370 1094 70941414
chr3 14167497 14167516 REST JASPAR yes 14166370 1127 70941415
chr3 14167510 14167522 INSM1 JASPAR yes 14166370 1140 70941416
chr3 14167512 14167532 RREB1 JASPAR yes 14166370 1142 70941417
chr3 14167513 14167527 PLAG1 JASPAR yes 14166370 1143 70941418
chr3 14167519 14167540 ZNF263 JASPAR yes 14166370 1149 70941419
chr3 14167523 14167533 SP1 JASPAR yes 14166370 1153 70941420
chr3 14167524 14167535 E2F6 JASPAR yes 14166370 1154 70941421
chr3 14167528 14167812 NR3C1 UCSC Txn Factor no Conserved 14166370 1158 108528336
chr3 14167566 14167579 SMAD2 JASPAR yes 14166370 1196 70941422
chr3 14167569 14167577 MEIS3 JASPAR yes 14166370 1199 70941423
chr3 14167569 14167582 EOMES JASPAR yes 14166370 1199 70941424
chr3 14167570 14167574 NFE TRANSFAC yes 14166370 1200 70941425
chr3 14167571 14167581 TBR1 JASPAR yes 14166370 1201 70941426
chr3 14167571 14167582 TBX2 JASPAR yes 14166370 1201 70941427
chr3 14167572 14167582 TBX21 JASPAR yes 14166370 1202 70941428
chr3 14167573 14167581 MGA JASPAR yes 14166370 1203 70941429
chr3 14167573 14167581 TBX15 JASPAR yes 14166370 1203 70941430
chr3 14167573 14167581 TBX1 JASPAR yes 14166370 1203 70941431
chr3 14167573 14167581 TBX4 JASPAR yes 14166370 1203 70941432
chr3 14167573 14167581 TBX5 JASPAR yes 14166370 1203 70941433
chr3 14167581 14167585 YY1 TRANSFAC yes 14166370 1211 70941434
chr3 14167590 14167600 SP1 JASPAR yes 14166370 1220 70941435
chr3 14167599 14167603 NFE TRANSFAC yes 14166370 1229 70941436
chr3 14167602 14167608 MZF1 JASPAR yes 14166370 1232 70941437
chr3 14167612 14167633 ZNF263 JASPAR yes 14166370 1242 70941438
chr3 14167614 14167635 ZNF263 JASPAR yes 14166370 1244 70941439
chr3 14167630 14167641 EBF1 JASPAR yes 14166370 1260 70941440
chr3 14167643 14167663 PPARG JASPAR yes 14166370 1273 70941441
chr3 14167667 14167684 NR3C1 JASPAR yes 14166370 1297 70941442
chr3 14167667 14167684 NR3C2 JASPAR yes 14166370 1297 70941443
chr3 14167674 14167680 SOX10 JASPAR yes 14166370 1304 70941444
chr3 14167694 14167700 ZNF354C JASPAR yes 14166370 1324 70941445
chr3 14167710 14167714 YY1 TRANSFAC yes 14166370 1340 70941446
SNPs associated with CHCHD4[ENSG00000163528.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 13927274 rs12629761 G C 226306 Spleen 0.152641 6565403
chr3 13304912 rs113284843 T C 848668 Ovary 0.42592 6561233
chr3 13663559 rs3773263 C T 490021 Uterus 0.373365 6563898
chr3 14943382 rs138267547 C T 777012 Liver 0.491794 6572858
chr3 14255020 rs112599750 A G 88650 Lung 0.0383885 6566502
chr3 14627020 rs75610618 C T 460650 Adrenal 0.243165 6570757
Details of CHCHD4[ENSG00000163528.8]
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Genomic Location chr3:14153580-14166370[-]
TSS 14166370
Gene Name CHCHD4
Ensembl ID ENSG00000163528.8
ENTREZID 131474
Uniprot
A0A024R2F8
Q8N4Q1
A0A024R2I5
Protein Name
isoform CRA_a
isoform CRA_b
Coiled-coil-helix-coiled-coil-helix domain containing 4
Coiled-coil-helix-coiled-coil-helix domain containing 4
Mitochondrial intermembrane space import and assembly protein 40
Expression levels of CHCHD4[ENSG00000163528.8]
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