EnhancerDB
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Enhancers that regulate NKX6-1[ENSG00000163623.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr4 85321925 85326075 enh101831 85419603 93528
Thyroid
chr4 85324628 85324862 vista45278 85419603 94741
VISTA
chr4 85339825 85343975 enh97485 85419603 75628
Epithelial (MCF-7)
chr4 85351965 85360155 enh83182 85419603 59448
Prostate (PC-3)
chr4 85390105 85394255 enh113585 85419603 25348
Brain (SK-N-MC)
chr4 85420434 85420908 vista45279 85419603 831
VISTA
chr4 85434285 85438435 enh36781 85419603 14682
Astrocyte
chr4 85446685 85455815 enh21654 85419603 27082
Prostate (PC-3) Brain (SK-N-MC) Placenta Lung (PC-9) Epithelial (MCF-7)
chr4 85466425 85470575 enh108950 85419603 46822
Lung (PC-9)
chr4 85481785 85492495 enh21655 85419603 62182
Thyroid Placenta Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Neural Stem Cells (H9)
chr4 85492985 85497135 enh108951 85419603 73382
Lung (PC-9)
chr4 85494002 85494148 vista45280 85419603 74399
VISTA
chr4 85494716 85495317 vista45281 85419603 75113
VISTA
chr4 85495597 85495833 vista45282 85419603 75994
VISTA
chr4 85513025 85520984 enh21656 85419603 93422
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Placenta Colon (HCT116) Lung (PC-9) Neural Stem Cells (H9)
Transcript facotrs that regulate NKX6-1[ENSG00000163623.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr4 85420438 85420449 CDX2 JASPAR yes 85419603 835 49252902
chr4 85420439 85420449 MNX1 JASPAR yes 85419603 836 49252903
chr4 85420439 85420450 HOXA10 JASPAR yes 85419603 836 49252904
chr4 85420439 85420450 HOXC12 JASPAR yes 85419603 836 49252905
chr4 85420440 85420449 CDX1 JASPAR yes 85419603 837 49252906
chr4 85420440 85420450 HOXA13 JASPAR yes 85419603 837 49252907
chr4 85420440 85420450 HOXB13 JASPAR yes 85419603 837 49252908
chr4 85420440 85420450 HOXD13 JASPAR yes 85419603 837 49252909
chr4 85420442 85420457 HNF1A JASPAR yes 85419603 839 49252910
chr4 85420446 85420462 SOX4 JASPAR yes 85419603 843 49252911
chr4 85420447 85420460 POU2F2 JASPAR yes 85419603 844 49252912
chr4 85420447 85420461 POU1F1 JASPAR yes 85419603 844 49252913
chr4 85420448 85420460 POU3F1 JASPAR yes 85419603 845 49252914
chr4 85420448 85420460 POU3F2 JASPAR yes 85419603 845 49252915
chr4 85420448 85420461 POU3F3 JASPAR yes 85419603 845 49252916
chr4 85420449 85420453 YY1 TRANSFAC yes 85419603 846 49252917
chr4 85420449 85420461 POU2F1 JASPAR yes 85419603 846 49252918
chr4 85420450 85420457 POU2F1 TRANSFAC yes 85419603 847 49252919
chr4 85420450 85420457 POU2F2C TRANSFAC yes 85419603 847 49252920
chr4 85420450 85420457 POU2F2 TRANSFAC yes 85419603 847 49252921
chr4 85420450 85420459 POU5F1B JASPAR yes 85419603 847 49252922
chr4 85420480 85420501 ZNF263 JASPAR yes 85419603 877 49252923
chr4 85420481 85420495 PLAG1 JASPAR yes 85419603 878 49252924
chr4 85420481 85420502 ZNF263 JASPAR yes 85419603 878 49252925
chr4 85420489 85420510 ZNF263 JASPAR yes 85419603 886 49252926
chr4 85420491 85420497 MAZ TRANSFAC yes 85419603 888 49252927
chr4 85420492 85420502 MZF1 JASPAR yes 85419603 889 49252928
chr4 85420495 85420505 ETV6 JASPAR yes 85419603 892 49252929
chr4 85420497 85420502 ETS2 TRANSFAC yes 85419603 894 49252930
chr4 85420530 85420542 CREB1 JASPAR yes 85419603 927 49252931
chr4 85420531 85420536 ATF1 TRANSFAC yes 85419603 928 49252932
chr4 85420550 85420555 SP1 TRANSFAC yes 85419603 947 49252933
chr4 85420550 85420557 SP1 TRANSFAC yes 85419603 947 49252934
chr4 85420570 85420582 TFAP2A JASPAR yes 85419603 967 49252935
chr4 85420571 85420582 TFAP2A JASPAR yes 85419603 968 49252936
chr4 85420572 85420581 TFAP2A JASPAR yes 85419603 969 49252937
chr4 85420582 85420585 MYB TRANSFAC yes 85419603 979 49252938
chr4 85420586 85420591 MYC TRANSFAC yes 85419603 983 49252939
chr4 85420594 85420598 H1TF2 TRANSFAC yes 85419603 991 49252940
chr4 85420594 85420598 NFE TRANSFAC yes 85419603 991 49252941
chr4 85420594 85420598 SRF TRANSFAC yes 85419603 991 49252942
chr4 85420594 85420600 NFYC TRANSFAC yes 85419603 991 49252943
chr4 85420623 85420634 EBF1 JASPAR yes 85419603 1020 49252944
chr4 85420623 85420636 TFAP2A JASPAR yes 85419603 1020 49252945
chr4 85420623 85420636 TFAP2B JASPAR yes 85419603 1020 49252946
chr4 85420623 85420636 TFAP2C JASPAR yes 85419603 1020 49252947
chr4 85420624 85420639 TFAP2C JASPAR yes 85419603 1021 49252948
chr4 85420625 85420636 EBF1 JASPAR yes 85419603 1022 49252949
chr4 85420625 85420636 TFAP2A JASPAR yes 85419603 1022 49252950
chr4 85420625 85420636 TFAP2B JASPAR yes 85419603 1022 49252951
chr4 85420626 85420635 TFAP2A JASPAR yes 85419603 1023 49252952
chr4 85420629 85420647 ESR1 JASPAR yes 85419603 1026 49252953
chr4 85420636 85420655 CTCF JASPAR yes 85419603 1033 49252954
chr4 85420655 85420673 NFYA JASPAR yes 85419603 1052 49252955
chr4 85420658 85420674 NFYA JASPAR yes 85419603 1055 49252956
chr4 85420661 85420676 NFYB JASPAR yes 85419603 1058 49252957
chr4 85420663 85420668 NFY TRANSFAC yes 85419603 1060 49252958
chr4 85420672 85420677 SP1 TRANSFAC yes 85419603 1069 49252959
chr4 85420673 85420678 SP1 TRANSFAC yes 85419603 1070 49252960
chr4 85420705 85420726 ZNF263 JASPAR yes 85419603 1102 49252961
chr4 85420706 85420712 SP1 TRANSFAC yes 85419603 1103 49252962
chr4 85420707 85420718 E2F4 JASPAR yes 85419603 1104 49252963
chr4 85420707 85420718 E2F6 JASPAR yes 85419603 1104 49252964
chr4 85420708 85420719 E2F1 JASPAR yes 85419603 1105 49252965
chr4 85420708 85420729 ZNF263 JASPAR yes 85419603 1105 49252966
chr4 85420712 85420733 ZNF263 JASPAR yes 85419603 1109 49252967
chr4 85420734 85420744 SP1 JASPAR yes 85419603 1131 49252968
chr4 85420735 85420744 SP1 TRANSFAC yes 85419603 1132 49252969
chr4 85420736 85420741 SP1 TRANSFAC yes 85419603 1133 49252970
chr4 85420737 85420742 SP1 TRANSFAC yes 85419603 1134 49252971
chr4 85420737 85420743 SP1 TRANSFAC yes 85419603 1134 49252972
chr4 85420740 85420745 SP1 TRANSFAC yes 85419603 1137 49252973
chr4 85420740 85420754 PLAG1 JASPAR yes 85419603 1137 49252974
chr4 85420750 85420761 E2F1 JASPAR yes 85419603 1147 49252975
chr4 85420751 85420756 SP1 TRANSFAC yes 85419603 1148 49252976
chr4 85420751 85420762 E2F4 JASPAR yes 85419603 1148 49252977
chr4 85420751 85420762 E2F6 JASPAR yes 85419603 1148 49252978
chr4 85420752 85420757 SP1 TRANSFAC yes 85419603 1149 49252979
chr4 85420754 85420774 RREB1 JASPAR yes 85419603 1151 49252980
chr4 85420776 85420783 E2F1 TRANSFAC yes 85419603 1173 49252981
chr4 85420785 85420790 SP1 TRANSFAC yes 85419603 1182 49252982
chr4 85420801 85420809 ISX JASPAR yes 85419603 1198 49252983
chr4 85420801 85420809 LHX9 JASPAR yes 85419603 1198 49252984
chr4 85420801 85420809 LMX1B JASPAR yes 85419603 1198 49252985
chr4 85420801 85420809 PRRX1 JASPAR yes 85419603 1198 49252986
chr4 85420801 85420809 RAX2 JASPAR yes 85419603 1198 49252987
chr4 85420801 85420809 SHOX JASPAR yes 85419603 1198 49252988
chr4 85420801 85420809 UNCX JASPAR yes 85419603 1198 49252989
chr4 85420805 85420813 BARX1 JASPAR yes 85419603 1202 49252990
chr4 85420816 85420837 IRF1 JASPAR yes 85419603 1213 49252991
chr4 85420821 85420842 ZNF263 JASPAR yes 85419603 1218 49252992
chr4 85420824 85420845 ZNF263 JASPAR yes 85419603 1221 49252993
chr4 85420830 85420840 SP1 JASPAR yes 85419603 1227 49252994
chr4 85420830 85420851 ZNF263 JASPAR yes 85419603 1227 49252995
chr4 85420831 85420841 SP1 JASPAR yes 85419603 1228 49252996
chr4 85420832 85420838 MAZ TRANSFAC yes 85419603 1229 49252997
chr4 85420833 85420843 MZF1 JASPAR yes 85419603 1230 49252998
chr4 85420836 85420857 ZNF263 JASPAR yes 85419603 1233 49252999
chr4 85420837 85420858 ZNF263 JASPAR yes 85419603 1234 49253000
chr4 85420838 85420843 ETS2 TRANSFAC yes 85419603 1235 49253001
chr4 85420874 85420881 SPIB JASPAR yes 85419603 1271 49253002
chr4 85420879 85420891 IRF1 JASPAR yes 85419603 1276 49253003
chr4 85420880 85420901 MAFG JASPAR yes 85419603 1277 49253004
chr4 85420885 85420903 MAFF JASPAR yes 85419603 1282 49253005
chr4 85420896 85420905 SRF TRANSFAC yes 85419603 1293 49253006
chr4 85420896 85420908 SRF JASPAR yes 85419603 1293 49253007
SNPs associated with NKX6-1[ENSG00000163623.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr4 84787506 rs59921913 ATGAC A 625634 Esophagus 0.184695 7656953
chr4 85961508 rs72950413 A G,T 541905 Esophagus 0.225531 7660313
chr4 85619598 rs138810509 T C 199995 Pancreas 0.244792 7659269
chr4 85079839 rs4693675 C T 333301 Breast 0.000247053 7657791
chr4 85875007 rs199600222 CA C 455404 Thyroid 0.079003 7660058
chr4 86048030 rs34835492 T C 628427 Lung 0.214358 7660566
Details of NKX6-1[ENSG00000163623.5]
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Genomic Location chr4:85413140-85419603[-]
TSS 85419603
Gene Name NKX6-1
Ensembl ID ENSG00000163623.5
ENTREZID 4825
Uniprot
P78426
Protein Name
Homeobox protein Nkx-6.1
Expression levels of NKX6-1[ENSG00000163623.5]
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