EnhancerDB
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Enhancers that regulate PTPN13[ENSG00000163629.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr4 87415220 87423995 enh57870 87515468 91473
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Ovary Esophagus Lung (A549) Muscle (A673) Thyroid Lung (PC-9) Pancreas
chr4 87425826 87436595 enh71274 87515468 78873
Prostate (PC-3) Muscle (A673) Thyroid Uterus Lung (PC-9) Neural Stem Cells (H9)
chr4 87440285 87446035 enh77318 87515468 69433
Muscle (A673) Prostate (PC-3)
chr4 87455225 87459375 enh113591 87515468 56093
Brain (SK-N-MC)
chr4 87463165 87468275 enh77319 87515468 47193
Muscle (A673) Peripheral Blood (MM.1S) Blood (T-cell) Brain (SK-N-MC)
chr4 87470005 87488115 enh54826 87515468 27353
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Muscle (A673) Thyroid Peripheral Blood (MM.1S) Uterus Epithelial (MCF-7)
chr4 87505205 87511095 enh59356 87515468 4373
Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Esophagus Thyroid Uterus Neural Stem Cells (H9)
chr4 87549905 87554055 enh77320 87515468 34437
Muscle (A673)
chr4 87579689 87588434 enh59357 87515468 64221
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Muscle (A673)
Transcript facotrs that regulate PTPN13[ENSG00000163629.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr4 87510469 87510475 ETS1 JASPAR yes 87515468 4993 91070696
chr4 87510476 87510482 LEF1 TRANSFAC yes 87515468 4986 91070697
chr4 87510476 87510482 SOX10 JASPAR yes 87515468 4986 91070698
chr4 87510486 87510502 SOX8 JASPAR yes 87515468 4966 91070699
chr4 87510501 87510510 NKX3-2 JASPAR yes 87515468 4958 91070700
chr4 87510501 87510511 NKX2-3 JASPAR yes 87515468 4957 91070701
chr4 87510532 87510536 NFE TRANSFAC yes 87515468 4932 91070702
chr4 87510552 87510561 HIC2 JASPAR yes 87515468 4907 91070703
chr4 87510555 87510559 LFA1 TRANSFAC yes 87515468 4909 91070704
chr4 87510557 87510566 SOX9 JASPAR yes 87515468 4902 91070705
chr4 87510564 87510568 H4TF2 TRANSFAC yes 87515468 4900 91070706
chr4 87510594 87510608 PLAG1 JASPAR yes 87515468 4860 91070707
chr4 87510601 87510606 SP1 TRANSFAC yes 87515468 4862 91070708
chr4 87510602 87510607 SP1 TRANSFAC yes 87515468 4861 91070709
chr4 87510605 87510618 NFKB1 JASPAR yes 87515468 4850 91070710
chr4 87510607 87510613 ZNF354C JASPAR yes 87515468 4855 91070711
chr4 87510610 87510621 USF1 JASPAR yes 87515468 4847 91070712
chr4 87510610 87510621 USF2 JASPAR yes 87515468 4847 91070713
chr4 87510611 87510621 SREBF2 JASPAR yes 87515468 4847 91070714
chr4 87510613 87510618 USF2 TRANSFAC yes 87515468 4850 91070715
chr4 87510616 87510629 NR2F1 JASPAR yes 87515468 4839 91070716
chr4 87510617 87510625 CREB1 JASPAR yes 87515468 4843 91070717
chr4 87510617 87510632 NR2C2 JASPAR yes 87515468 4836 91070718
chr4 87510620 87510624 ESR1 TRANSFAC yes 87515468 4844 91070719
chr4 87510646 87510658 YY1 JASPAR yes 87515468 4810 91070720
chr4 87510650 87510661 CEBPB JASPAR yes 87515468 4807 91070721
chr4 87510651 87510664 NFKB1 JASPAR yes 87515468 4804 91070722
chr4 87510651 87510664 NFKB2 JASPAR yes 87515468 4804 91070723
chr4 87510667 87510682 MEF2C JASPAR yes 87515468 4786 91070724
chr4 87510668 87510683 MEF2A JASPAR yes 87515468 4785 91070725
chr4 87510669 87510681 MEF2A JASPAR yes 87515468 4787 91070726
chr4 87510669 87510681 MEF2B JASPAR yes 87515468 4787 91070727
chr4 87510669 87510681 MEF2D JASPAR yes 87515468 4787 91070728
chr4 87510681 87510700 PAX5 JASPAR yes 87515468 4768 91070729
chr4 87510690 87510700 SP1 JASPAR yes 87515468 4768 91070730
chr4 87510760 87510770 SP1 JASPAR yes 87515468 4698 91070731
chr4 87510760 87510781 ZNF263 JASPAR yes 87515468 4687 91070732
chr4 87510762 87510767 SP1 TRANSFAC yes 87515468 4701 91070733
chr4 87510762 87510774 HINFP JASPAR yes 87515468 4694 91070734
chr4 87510777 87510785 SP1 TRANSFAC yes 87515468 4683 91070735
chr4 87510785 87510796 CEBPB JASPAR yes 87515468 4672 91070736
chr4 87510785 87510797 HLF JASPAR yes 87515468 4671 91070737
chr4 87510786 87510796 CEBPB JASPAR yes 87515468 4672 91070738
chr4 87510786 87510796 CEBPD JASPAR yes 87515468 4672 91070739
chr4 87510786 87510796 CEBPE JASPAR yes 87515468 4672 91070740
chr4 87510786 87510796 CEBPG JASPAR yes 87515468 4672 91070741
chr4 87510786 87510797 CEBPA JASPAR yes 87515468 4671 91070742
chr4 87510832 87510847 FOXP1 JASPAR yes 87515468 4621 91070743
chr4 87510833 87510848 FOXP1 JASPAR yes 87515468 4620 91070744
chr4 87510833 87510854 IRF1 JASPAR yes 87515468 4614 91070745
chr4 87510834 87510849 FOXP1 JASPAR yes 87515468 4619 91070746
chr4 87510837 87510852 PRDM1 JASPAR yes 87515468 4616 91070747
chr4 87510837 87510852 STAT2 JASPAR yes 87515468 4616 91070748
chr4 87510883 87510896 HSF2 JASPAR yes 87515468 4572 91070749
chr4 87510897 87510910 ZBTB18 JASPAR yes 87515468 4558 91070750
chr4 87510934 87510940 SOX10 JASPAR yes 87515468 4528 91070751
chr4 87510945 87510949 YY1 TRANSFAC yes 87515468 4519 91070752
chr4 87510968 87510983 MEF2C JASPAR yes 87515468 4485 91070753
chr4 87510969 87510984 MEF2A JASPAR yes 87515468 4484 91070754
chr4 87510970 87510982 MEF2A JASPAR yes 87515468 4486 91070755
chr4 87510970 87510982 MEF2B JASPAR yes 87515468 4486 91070756
chr4 87510970 87510982 MEF2D JASPAR yes 87515468 4486 91070757
chr4 87510990 87510999 HIC2 JASPAR yes 87515468 4469 91070758
chr4 87510991 87511007 ZNF143 JASPAR yes 87515468 4461 91070759
chr4 87510992 87511002 SP1 JASPAR yes 87515468 4466 91070760
chr4 87510993 87510997 LFA1 TRANSFAC yes 87515468 4471 91070761
chr4 87511030 87511051 ZNF263 JASPAR yes 87515468 4417 91070762
chr4 87511048 87511058 SREBF2 JASPAR yes 87515468 4410 91070763
SNPs associated with PTPN13[ENSG00000163629.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr4 86665204 rs115664695 C T 850264 Pancreas 0.21083 7663830
chr4 88296371 rs78319440 T C 560047 Breast 0.314099 7671636
chr4 87581558 rs187973280 T A 0 Spleen 0.0460557 7667646
chr4 87976359 rs1471251 A T 240035 Uterus 0.253118 7669929
chr4 87467494 rs112966296 A G 47974 Thyroid 6.271e-38 7667277
chr4 86743432 rs374141703 TTGG T 772036 Liver 0.287184 7664530
chr4 87779085 rs13106349 A C 42761 Lung 0.0322717 7668020
Details of PTPN13[ENSG00000163629.8]
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Genomic Location chr4:87515468-87736324[+]
TSS 87515468
Gene Name PTPN13
Ensembl ID ENSG00000163629.8
ENTREZID 5783
Uniprot
Q12923
Protein Name
Putative uncharacterized protein PTPN13
Tyrosine-protein phosphatase non-receptor type 13
Expression levels of PTPN13[ENSG00000163629.8]
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