EnhancerDB
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Enhancers that regulate ABCA3[ENSG00000167972.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 2287431 2291929 enh86200 2390747 98818
Colon (HCT116)
chr16 2379625 2386175 enh96652 2390747 4572
Thyroid Epithelial (MCF-7)
chr16 2407421 2407607 vista21571 2390747 16674
VISTA
chr16 2412862 2425435 enh31668 2390747 22115
Brain (SK-N-SH) Large Intestine Astrocyte Blood (GM12878) Muscle (Myoblast) Spleen
chr16 2433545 2441303 enh69014 2390747 42798
Prostate (PC-3) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Stomach
chr16 2464585 2468735 enh31669 2390747 73838
Astrocyte
chr16 2478608 2478672 vista21572 2390747 87861
VISTA
Transcript facotrs that regulate ABCA3[ENSG00000167972.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 2385748 2385761 ZBTB18 JASPAR yes 2390747 4986 9174678
chr16 2385752 2385757 MYC TRANSFAC yes 2390747 4990 9174679
chr16 2385754 2385764 RUNX3 JASPAR yes 2390747 4983 9174680
chr16 2385759 2385763 ESR1 TRANSFAC yes 2390747 4984 9174681
chr16 2385760 2385770 GSX2 JASPAR yes 2390747 4977 9174682
chr16 2385760 2385770 HESX1 JASPAR yes 2390747 4977 9174683
chr16 2385760 2385770 LBX2 JASPAR yes 2390747 4977 9174684
chr16 2385760 2385770 MIXL1 JASPAR yes 2390747 4977 9174685
chr16 2385760 2385770 MNX1 JASPAR yes 2390747 4977 9174686
chr16 2385760 2385770 RAX JASPAR yes 2390747 4977 9174687
chr16 2385761 2385769 ISX JASPAR yes 2390747 4978 9174688
chr16 2385761 2385769 LHX9 JASPAR yes 2390747 4978 9174689
chr16 2385761 2385769 LMX1B JASPAR yes 2390747 4978 9174690
chr16 2385761 2385769 PRRX1 JASPAR yes 2390747 4978 9174691
chr16 2385761 2385769 RAX2 JASPAR yes 2390747 4978 9174692
chr16 2385761 2385769 SHOX JASPAR yes 2390747 4978 9174693
chr16 2385761 2385769 UNCX JASPAR yes 2390747 4978 9174694
chr16 2385766 2385777 FOXA1 JASPAR yes 2390747 4970 9174695
chr16 2385766 2385781 FOXA1 JASPAR yes 2390747 4966 9174696
chr16 2385767 2385779 FOXC2 JASPAR yes 2390747 4968 9174697
chr16 2385767 2385787 RREB1 JASPAR yes 2390747 4960 9174698
chr16 2385768 2385780 FOXI1 JASPAR yes 2390747 4967 9174699
chr16 2385768 2385788 RREB1 JASPAR yes 2390747 4959 9174700
chr16 2385771 2385791 RREB1 JASPAR yes 2390747 4956 9174701
chr16 2385772 2385784 FOXI1 JASPAR yes 2390747 4963 9174702
chr16 2385772 2385792 RREB1 JASPAR yes 2390747 4955 9174703
chr16 2385776 2385796 RREB1 JASPAR yes 2390747 4951 9174704
chr16 2385778 2385798 RREB1 JASPAR yes 2390747 4949 9174705
chr16 2385779 2385794 RUNX2 JASPAR yes 2390747 4953 9174706
chr16 2385780 2385789 RUNX2 JASPAR yes 2390747 4958 9174707
chr16 2385780 2385790 RUNX3 JASPAR yes 2390747 4957 9174708
chr16 2385780 2385791 RUNX1 JASPAR yes 2390747 4956 9174709
chr16 2385798 2385813 MEF2A JASPAR yes 2390747 4934 9174710
chr16 2385800 2385810 MEF2A JASPAR yes 2390747 4937 9174711
chr16 2385804 2385822 IRF2 JASPAR yes 2390747 4925 9174712
chr16 2385805 2385817 IRF1 JASPAR yes 2390747 4930 9174713
chr16 2385837 2385847 NFATC3 JASPAR yes 2390747 4900 9174714
chr16 2385839 2385846 NFATC2 JASPAR yes 2390747 4901 9174715
chr16 2385855 2385860 GATA1 TRANSFAC yes 2390747 4887 9174716
chr16 2385884 2385888 ESR1 TRANSFAC yes 2390747 4859 9174717
chr16 2385887 2385891 YY1 TRANSFAC yes 2390747 4856 9174718
chr16 2385902 2385906 YY1 TRANSFAC yes 2390747 4841 9174719
chr16 2385905 2385911 TCF1 TRANSFAC yes 2390747 4836 9174720
chr16 2385973 2385977 YY1 TRANSFAC yes 2390747 4770 9174721
chr16 2385976 2385988 IRF1 JASPAR yes 2390747 4759 9174722
chr16 2385976 2385990 IRF7 JASPAR yes 2390747 4757 9174723
chr16 2385976 2385991 IRF9 JASPAR yes 2390747 4756 9174724
chr16 2385984 2385994 HOXC10 JASPAR yes 2390747 4753 9174725
chr16 2385984 2385994 HOXD11 JASPAR yes 2390747 4753 9174726
chr16 2385984 2385995 HOXA10 JASPAR yes 2390747 4752 9174727
chr16 2385984 2385995 HOXC11 JASPAR yes 2390747 4752 9174728
chr16 2385986 2385994 NKX6-1 JASPAR yes 2390747 4753 9174729
chr16 2386027 2386042 MEF2A JASPAR yes 2390747 4705 9174730
chr16 2386029 2386039 MEF2A JASPAR yes 2390747 4708 9174731
chr16 2386042 2386053 DUX4 JASPAR yes 2390747 4694 9174732
chr16 2386051 2386055 NFE TRANSFAC yes 2390747 4692 9174733
chr16 2386058 2386064 TCF1 TRANSFAC yes 2390747 4683 9174734
chr16 2386059 2386074 PRDM1 JASPAR yes 2390747 4673 9174735
chr16 2386066 2386078 IRF1 JASPAR yes 2390747 4669 9174736
chr16 2386088 2386098 MSC JASPAR yes 2390747 4649 9174737
chr16 2386099 2386117 NR3C1 JASPAR yes 2390747 4630 9174738
chr16 2386106 2386127 REST JASPAR yes 2390747 4620 9174739
chr16 2386110 2386125 MEF2C JASPAR yes 2390747 4622 9174740
chr16 2386111 2386126 MEF2A JASPAR yes 2390747 4621 9174741
chr16 2386112 2386124 MEF2B JASPAR yes 2390747 4623 9174742
chr16 2386125 2386129 YY1 TRANSFAC yes 2390747 4618 9174743
chr16 2386127 2386142 FOXP1 JASPAR yes 2390747 4605 9174744
chr16 2386130 2386141 FOXP2 JASPAR yes 2390747 4606 9174745
chr16 2386131 2386139 FOXO3 JASPAR yes 2390747 4608 9174746
chr16 2386151 2386167 RFX2 JASPAR yes 2390747 4580 9174747
chr16 2386151 2386167 RFX3 JASPAR yes 2390747 4580 9174748
chr16 2386151 2386167 RFX4 JASPAR yes 2390747 4580 9174749
chr16 2386161 2386171 MLX JASPAR yes 2390747 4576 9174750
SNPs associated with ABCA3[ENSG00000167972.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 3122002 rs2717677 C T 731255 Esophagus 0.240497 4266726
chr16 2502269 rs77375192 A C,T 111522 Esophagus 0.0875808 4261714
chr16 1602323 rs2281233 T C 723559 Breast 0.327712 4256725
chr16 2054155 rs8045887 G A 271727 Spleen 0.381256 4259740
chr16 2900371 rs11866202 T C 509624 Ovary 0.321506 4264389
chr16 2479213 rs79038845 T C 88466 Stomach 0.132941 4261628
Details of ABCA3[ENSG00000167972.9]
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Genomic Location chr16:2325882-2390747[-]
TSS 2390747
Gene Name ABCA3
Ensembl ID ENSG00000167972.9
ENTREZID 21
Uniprot
Q99758
Q4LE27
Protein Name
sub-family A
ATP-binding cassette
ATP-binding cassette sub-family A member 3
Expression levels of ABCA3[ENSG00000167972.9]
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