EnhancerDB
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  3. KDM2A[ENSG00000173120.10]
Enhancers that regulate KDM2A[ENSG00000173120.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr11 66787325 66797555 enh1844 66886740 89185
Epithelial (MCF-7) Blood (OCI-LY7) Placenta Blood (Karpas-422) Stomach
chr11 66801218 66801427 vista10673 66886740 85313
VISTA
chr11 66825447 66832555 enh14013 66886740 54185
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Placenta Colon (HCT116) Lung (PC-9) Epithelial (MCF-7)
chr11 66829661 66830298 vista10674 66886740 56442
VISTA
chr11 66833545 66837695 enh14014 66886740 49045
Placenta
chr11 66841490 66853575 enh14015 66886740 33165
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Esophagus Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Epithelial (MCF-7)
chr11 66844888 66845141 vista10675 66886740 41599
VISTA
chr11 66845381 66845631 vista10676 66886740 41109
VISTA
chr11 66845907 66846062 vista10677 66886740 40678
VISTA
chr11 66849173 66849303 vista10678 66886740 37437
VISTA
chr11 66854545 66858695 enh90901 66886740 28045
Bone Marrow (K562)
chr11 66865545 66875955 enh47497 66886740 10785
Peripheral Blood (MM.1S) Thymus Blood (T-cell)
chr11 66876785 66880975 enh98820 66886740 5765
Peripheral Blood (MM.1S) Uterus Stomach
chr11 66882341 66882514 vista10679 66886740 4226
VISTA
chr11 66891265 66895855 enh108475 66886740 4525
Lung (PC-9)
chr11 66902265 66906415 enh109501 66886740 15525
Stomach
chr11 66911185 66916215 enh28841 66886740 24445
Prostate (PC-3) Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Lung (PC-9) Epithelial (MCF-7)
chr11 66923765 66944023 enh1845 66886740 37025
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Stomach Epithelial (MCF-7) Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr11 66954625 66958775 enh108476 66886740 67885
Lung (PC-9)
chr11 66977328 66981472 enh60298 66886740 90588
Blood (OCI-LY7)
Transcript facotrs that regulate KDM2A[ENSG00000173120.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr11 66877966 66883731 ZNF143 GTRD no Epithelial (MCF-7) 66886740 3009 107983688
chr11 66879235 66882691 ZNF274 GTRD no Cervix (HeLa-S3) 66886740 4049 107983689
chr11 66879699 66882792 ZNF143 GTRD no Epithelial (MCF-7) 66886740 3948 107983690
chr11 66879897 66883810 ZNF143 GTRD no Epithelial (MCF-7) 66886740 2930 107983691
chr11 66880222 66883665 ZNF143 GTRD no Epithelial (MCF-7) 66886740 3075 107983692
chr11 66880259 66882658 ZNF143 GTRD no Epithelial (MCF-7) 66886740 4082 107983693
chr11 66880264 66882540 ZNF143 GTRD no Epithelial (MCF-7) 66886740 4200 107983694
chr11 66880299 66882547 ZNF143 GTRD no Epithelial (MCF-7) 66886740 4193 107983695
chr11 66880341 66882617 ZNF143 GTRD no Epithelial (MCF-7) 66886740 4123 107983696
chr11 66880577 66885137 ZBTB33 GTRD no Lung (A549) 66886740 1603 107983697
chr11 66880926 66884082 ZBTB33 GTRD no Lung (A549) 66886740 2658 107983698
chr11 66881082 66883984 ZBTB33 GTRD no Lung (A549) 66886740 2756 107983699
chr11 66881153 66883834 ZBTB33 GTRD no Lung (A549) 66886740 2906 107983700
chr11 66881181 66883884 ZNF143 GTRD no Epithelial (MCF-7) 66886740 2856 107983701
chr11 66881258 66883734 ZNF143 GTRD no Epithelial (MCF-7) 66886740 3006 107983702
chr11 66881329 66883639 TCF7L2 GTRD no Colon (HCT116) 66886740 3101 107983703
chr11 66881759 66884151 ZBTB33 GTRD no Lung (A549) 66886740 2589 107983704
chr11 66881767 66882618 ZNF274 GTRD no Bone Marrow (K562) 66886740 4122 107983705
chr11 66881828 66882488 ZNF274 GTRD no Bone Marrow (K562) 66886740 4252 107983706
chr11 66881840 66882433 ZNF274 GTRD no Bone Marrow (K562) 66886740 4307 107983707
chr11 66881939 66882519 ZNF274 GTRD no Bone Marrow (K562) 66886740 4221 107983708
chr11 66881940 66883775 ZBTB33 GTRD no Lung (A549) 66886740 2965 107983709
chr11 66881956 66884106 ZBTB33 GTRD no Lung (A549) 66886740 2634 107983710
chr11 66882029 66882403 ZNF274 GTRD no Bone Marrow (K562) 66886740 4337 107983711
chr11 66882087 66883619 ZNF143 GTRD no Epithelial (MCF-7) 66886740 3121 107983712
chr11 66882092 66882404 ZNF274 GTRD no Bone Marrow (K562) 66886740 4336 107983713
chr11 66882122 66883999 ZNF143 GTRD no Epithelial (MCF-7) 66886740 2741 107983714
chr11 66882126 66883691 ZNF143 GTRD no Epithelial (MCF-7) 66886740 3049 107983715
chr11 66882142 66883621 TCF7L2 GTRD no Colon (HCT116) 66886740 3119 107983716
chr11 66882171 66883647 ZNF274 GTRD no Blood (GM12878) 66886740 3093 107983717
chr11 66882206 66883754 TCF7L2 GTRD no Colon (HCT116) 66886740 2986 107983718
chr11 66882267 66883634 TCF7L2 GTRD no Colon (HCT116) 66886740 3106 107983719
chr11 66882341 66882356 FOXP1 JASPAR yes 66886740 4384 114090676
chr11 66882342 66882357 FOXP1 JASPAR yes 66886740 4383 114090677
chr11 66882342 66882363 IRF1 JASPAR yes 66886740 4377 114090678
chr11 66882343 66882358 FOXP1 JASPAR yes 66886740 4382 114090679
chr11 66882343 66882364 IRF1 JASPAR yes 66886740 4376 114090680
chr11 66882344 66882359 FOXP1 JASPAR yes 66886740 4381 114090681
chr11 66882344 66882365 IRF1 JASPAR yes 66886740 4375 114090682
chr11 66882345 66882360 FOXP1 JASPAR yes 66886740 4380 114090683
chr11 66882345 66882366 IRF1 JASPAR yes 66886740 4374 114090684
chr11 66882345 66884199 ZBTB33 GTRD no Lung (A549) 66886740 2541 107983720
chr11 66882346 66882361 FOXP1 JASPAR yes 66886740 4379 114090685
chr11 66882346 66882367 IRF1 JASPAR yes 66886740 4373 114090686
chr11 66882347 66882362 FOXP1 JASPAR yes 66886740 4378 114090687
chr11 66882347 66882368 IRF1 JASPAR yes 66886740 4372 114090688
chr11 66882348 66882363 FOXP1 JASPAR yes 66886740 4377 114090689
chr11 66882348 66882369 IRF1 JASPAR yes 66886740 4371 114090690
chr11 66882349 66882364 FOXP1 JASPAR yes 66886740 4376 114090691
chr11 66882349 66882370 IRF1 JASPAR yes 66886740 4370 114090692
chr11 66882350 66882365 FOXP1 JASPAR yes 66886740 4375 114090693
chr11 66882350 66882371 IRF1 JASPAR yes 66886740 4369 114090694
chr11 66882351 66882366 FOXP1 JASPAR yes 66886740 4374 114090695
chr11 66882352 66882367 FOXP1 JASPAR yes 66886740 4373 114090696
chr11 66882354 66882369 PRDM1 JASPAR yes 66886740 4371 114090697
chr11 66882359 66882380 ZNF263 JASPAR yes 66886740 4360 114090698
chr11 66882363 66882384 ZNF263 JASPAR yes 66886740 4356 114090699
chr11 66882365 66882371 MAZ TRANSFAC yes 66886740 4369 114090700
chr11 66882366 66882376 MZF1 JASPAR yes 66886740 4364 114090701
chr11 66882369 66882390 ZNF263 JASPAR yes 66886740 4350 114090702
chr11 66882371 66882376 ETS2 TRANSFAC yes 66886740 4364 114090703
chr11 66882387 66882398 NFE2 JASPAR yes 66886740 4342 114090704
chr11 66882387 66882405 MAFF JASPAR yes 66886740 4335 114090705
chr11 66882388 66882397 JDP2 JASPAR yes 66886740 4343 114090706
chr11 66882388 66882403 MAFK JASPAR yes 66886740 4337 114090707
chr11 66882392 66882405 EOMES JASPAR yes 66886740 4335 114090708
chr11 66882394 66882405 TBX20 JASPAR yes 66886740 4335 114090709
chr11 66882395 66882405 TBX21 JASPAR yes 66886740 4335 114090710
chr11 66882396 66882404 MGA JASPAR yes 66886740 4336 114090711
chr11 66882396 66882404 TBX15 JASPAR yes 66886740 4336 114090712
chr11 66882396 66882404 TBX1 JASPAR yes 66886740 4336 114090713
chr11 66882396 66882404 TBX4 JASPAR yes 66886740 4336 114090714
chr11 66882396 66882404 TBX5 JASPAR yes 66886740 4336 114090715
chr11 66882397 66882406 NKX3-2 JASPAR yes 66886740 4334 114090716
chr11 66882398 66882406 ISL2 JASPAR yes 66886740 4334 114090717
chr11 66882406 66882742 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66886740 3998 107983721
chr11 66882410 66882419 POU3F4 JASPAR yes 66886740 4321 114090718
chr11 66882410 66882419 POU5F1B JASPAR yes 66886740 4321 114090719
chr11 66882431 66882721 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66886740 4019 107983722
chr11 66882438 66882711 ZNF274 GTRD no Blood (GM12878) 66886740 4029 107983723
chr11 66882441 66882701 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66886740 4039 107983724
chr11 66882447 66882459 HNF1B JASPAR yes 66886740 4281 114090720
chr11 66882454 66882459 MYB TRANSFAC yes 66886740 4281 114090721
chr11 66882462 66882473 FOXB1 JASPAR yes 66886740 4267 114090722
chr11 66882466 66882473 NKX3-1 JASPAR yes 66886740 4267 114090723
chr11 66882476 66882484 EHF JASPAR yes 66886740 4256 114090724
chr11 66882476 66882497 ZNF263 JASPAR yes 66886740 4243 114090725
chr11 66882478 66882483 ETS2 TRANSFAC yes 66886740 4257 114090726
chr11 66882480 66882608 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66886740 4132 107983725
chr11 66882481 66882502 IRF1 JASPAR yes 66886740 4238 114090727
chr11 66882484 66882505 IRF1 JASPAR yes 66886740 4235 114090728
chr11 66882485 66882506 IRF1 JASPAR yes 66886740 4234 114090729
chr11 66882486 66882507 IRF1 JASPAR yes 66886740 4233 114090730
chr11 66882487 66882502 FOXP1 JASPAR yes 66886740 4238 114090731
chr11 66882487 66882508 IRF1 JASPAR yes 66886740 4232 114090732
chr11 66882488 66882509 IRF1 JASPAR yes 66886740 4231 114090733
chr11 66882489 66882504 FOXP1 JASPAR yes 66886740 4236 114090734
chr11 66882489 66882510 IRF1 JASPAR yes 66886740 4230 114090735
chr11 66882490 66882505 FOXP1 JASPAR yes 66886740 4235 114090736
chr11 66882490 66882511 IRF1 JASPAR yes 66886740 4229 114090737
chr11 66882491 66882506 FOXP1 JASPAR yes 66886740 4234 114090738
chr11 66882491 66882512 IRF1 JASPAR yes 66886740 4228 114090739
chr11 66882492 66882507 FOXP1 JASPAR yes 66886740 4233 114090740
chr11 66882492 66882513 IRF1 JASPAR yes 66886740 4227 114090741
chr11 66882493 66882508 FOXP1 JASPAR yes 66886740 4232 114090742
chr11 66882493 66882514 IRF1 JASPAR yes 66886740 4226 114090743
chr11 66882494 66882509 FOXP1 JASPAR yes 66886740 4231 114090744
chr11 66882495 66882510 FOXP1 JASPAR yes 66886740 4230 114090745
chr11 66882496 66882511 FOXP1 JASPAR yes 66886740 4229 114090746
chr11 66882497 66882512 FOXP1 JASPAR yes 66886740 4228 114090747
chr11 66882498 66882513 FOXP1 JASPAR yes 66886740 4227 114090748
chr11 66882499 66882514 FOXP1 JASPAR yes 66886740 4226 114090749
chr11 66891713 66891719 ZNF354C JASPAR yes 66886740 4973 39403497
chr11 66891716 66891726 GCM2 JASPAR yes 66886740 4976 39403498
chr11 66891739 66891758 PITX2 TRANSFAC yes 66886740 4999 39403499
SNPs associated with KDM2A[ENSG00000173120.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr11 67343597 rs7102855 G A 318039 Pancreas 0.272661 2058322
chr11 66877306 rs79631910 A C,G 9434 Spleen 0.417791 2055749
chr11 66746613 rs139156821 T G 140127 Ovary 0.157259 2054744
chr11 67312466 rs34802338 G A 286908 Uterus 0.350386 2058033
chr11 66865764 rs141587974 A G 20976 Lung 0.133401 2055618
chr11 67426797 rs6591267 G A 401239 Adrenal 0.0669505 2059321
Details of KDM2A[ENSG00000173120.10]
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Genomic Location chr11:66886740-67025558[+]
TSS 66886740
Gene Name KDM2A
Ensembl ID ENSG00000173120.10
ENTREZID 22992
Uniprot
I3VM54
I3VM53
Q9Y2K7
Protein Name
isoform CRA_a
Alternative protein KDM2A
F-box and leucine-rich repeat protein 11
Lysine-specific demethylase 2A
Expression levels of KDM2A[ENSG00000173120.10]
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