EnhancerDB
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Enhancers that regulate SNCG[ENSG00000173267.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr10 88609059 88634881 enh28312 88718375 83494
Prostate (PC-3) Liver (HepG2) Kidney Brain (SK-N-MC) Esophagus Astrocyte Stomach Muscle (A673) Thyroid Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Spleen Neural Stem Cells (H9) Heart
chr10 88622539 88622751 vista8185 88718375 95624
VISTA
chr10 88631620 88631813 vista8186 88718375 86562
VISTA
chr10 88637065 88641215 enh74639 88718375 77160
Muscle (A673)
chr10 88641465 88645615 enh74640 88718375 72760
Muscle (A673)
chr10 88657117 88664335 enh64358 88718375 54040
Heart
chr10 88697245 88701455 enh90839 88718375 16920
Bone Marrow (K562) Uterus Ovary
chr10 88708165 88713195 enh107484 88718375 5180
Blood (T-cell) Lung (PC-9)
chr10 88713984 88714363 vista8187 88718375 4012
VISTA
chr10 88732445 88742955 enh43356 88718375 14070
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Bone (Osteoblast) Stomach Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Heart
chr10 88750325 88754795 enh13367 88718375 31950
Placenta
chr10 88765565 88770375 enh13368 88718375 47190
Prostate (PC-3) Placenta Epithelial (MCF-7)
chr10 88796649 88800799 enh62073 88718375 78274
Esophagus
chr10 88804079 88804159 vista8188 88718375 85704
VISTA
chr10 88812425 88816575 enh74641 88718375 94050
Muscle (A673)
Transcript facotrs that regulate SNCG[ENSG00000173267.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr10 88713782 88714452 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3923 107929502
chr10 88713936 88714516 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3859 107929503
chr10 88713942 88714382 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3993 107929504
chr10 88713951 88714471 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3904 107929505
chr10 88713954 88714564 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3811 107929506
chr10 88713956 88714356 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 4019 107929507
chr10 88713989 88714365 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 88718375 4010 107929508
chr10 88713996 88714396 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3979 107929509
chr10 88714000 88714344 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4031 107929510
chr10 88714009 88714020 ESRRA JASPAR yes 88718375 4355 21127597
chr10 88714010 88714334 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4041 107929511
chr10 88714017 88714347 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4028 107929512
chr10 88714023 88714547 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 88718375 3828 107929513
chr10 88714029 88714050 ZNF263 JASPAR yes 88718375 4325 21127598
chr10 88714029 88714329 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 4046 107929514
chr10 88714050 88714390 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3985 107929515
chr10 88714051 88714057 GATA3 JASPAR yes 88718375 4318 21127599
chr10 88714052 88714348 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 88718375 4027 107929516
chr10 88714053 88714373 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4002 107929517
chr10 88714055 88714359 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4016 107929518
chr10 88714057 88714287 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4088 107929519
chr10 88714057 88714427 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3948 107929520
chr10 88714058 88714308 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4067 107929521
chr10 88714064 88714320 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4055 107929522
chr10 88714065 88714321 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4054 107929523
chr10 88714078 88714338 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4037 107929524
chr10 88714078 88714408 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3967 107929525
chr10 88714079 88714268 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 4107 107929526
chr10 88714084 88714358 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4017 107929527
chr10 88714085 88714265 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4110 107929528
chr10 88714086 88714756 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3619 107929529
chr10 88714087 88714257 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 88718375 4118 107929530
chr10 88714089 88714399 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3976 107929531
chr10 88714096 88714101 SP1 TRANSFAC yes 88718375 4274 21127600
chr10 88714107 88714128 ZNF263 JASPAR yes 88718375 4247 21127601
chr10 88714108 88714444 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3931 107929532
chr10 88714109 88714325 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4050 107929533
chr10 88714110 88714131 ZNF263 JASPAR yes 88718375 4244 21127602
chr10 88714114 88714135 ZNF263 JASPAR yes 88718375 4240 21127603
chr10 88714115 88714125 SP1 JASPAR yes 88718375 4250 21127604
chr10 88714115 88714391 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 3984 107929534
chr10 88714117 88714361 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 4014 107929535
chr10 88714118 88714128 SP1 JASPAR yes 88718375 4247 21127605
chr10 88714122 88714366 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 88718375 4009 107929536
chr10 88714129 88714146 RARA JASPAR yes 88718375 4229 21127606
chr10 88714129 88714146 RXRA JASPAR yes 88718375 4229 21127607
chr10 88714130 88714145 RUNX2 JASPAR yes 88718375 4230 21127608
chr10 88714131 88714146 ESR2 JASPAR yes 88718375 4229 21127609
chr10 88714131 88714151 ESR1 JASPAR yes 88718375 4224 21127610
chr10 88714138 88714149 ESRRA JASPAR yes 88718375 4226 21127611
chr10 88714138 88714149 ESRRB JASPAR yes 88718375 4226 21127612
chr10 88714139 88714147 NR4A2 JASPAR yes 88718375 4228 21127613
chr10 88714147 88714151 LFA1 TRANSFAC yes 88718375 4224 21127614
chr10 88714150 88714426 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3949 107929537
chr10 88714155 88714165 SP1 JASPAR yes 88718375 4210 21127615
chr10 88714188 88714201 TFAP2A JASPAR yes 88718375 4174 21127616
chr10 88714188 88714201 TFAP2B JASPAR yes 88718375 4174 21127617
chr10 88714188 88714201 TFAP2C JASPAR yes 88718375 4174 21127618
chr10 88714202 88714454 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3921 107929538
chr10 88714207 88714227 RREB1 JASPAR yes 88718375 4148 21127619
chr10 88714209 88714230 ZNF263 JASPAR yes 88718375 4145 21127620
chr10 88714214 88714235 ZNF263 JASPAR yes 88718375 4140 21127621
chr10 88714216 88714226 ZNF740 JASPAR yes 88718375 4149 21127622
chr10 88714218 88714228 ZNF740 JASPAR yes 88718375 4147 21127623
chr10 88714221 88714231 SP1 JASPAR yes 88718375 4144 21127624
chr10 88714221 88714451 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88718375 3924 107929539
chr10 88714223 88714228 ETS2 TRANSFAC yes 88718375 4147 21127625
chr10 88714223 88714238 PRDM1 JASPAR yes 88718375 4137 21127626
chr10 88714232 88714253 ZNF263 JASPAR yes 88718375 4122 21127627
chr10 88714235 88714256 ZNF263 JASPAR yes 88718375 4119 21127628
chr10 88714242 88714252 SP1 JASPAR yes 88718375 4123 21127629
chr10 88714242 88714252 ZNF740 JASPAR yes 88718375 4123 21127630
chr10 88714244 88714250 MAZ TRANSFAC yes 88718375 4125 21127631
chr10 88714245 88714255 MZF1 JASPAR yes 88718375 4120 21127632
chr10 88714248 88714258 SP1 JASPAR yes 88718375 4117 21127633
chr10 88714250 88714256 MAZ TRANSFAC yes 88718375 4119 21127634
chr10 88714257 88714273 POU4F2 JASPAR yes 88718375 4102 21127635
chr10 88714257 88714273 POU4F3 JASPAR yes 88718375 4102 21127636
chr10 88714259 88714273 POU4F1 JASPAR yes 88718375 4102 21127637
chr10 88714263 88714267 YY1 TRANSFAC yes 88718375 4108 21127638
chr10 88714264 88714276 POU2F1 JASPAR yes 88718375 4099 21127639
chr10 88714264 88714277 POU3F3 JASPAR yes 88718375 4098 21127640
chr10 88714264 88714278 POU1F1 JASPAR yes 88718375 4097 21127641
chr10 88714265 88714277 POU3F1 JASPAR yes 88718375 4098 21127642
chr10 88714265 88714277 POU3F2 JASPAR yes 88718375 4098 21127643
chr10 88714266 88714275 POU3F4 JASPAR yes 88718375 4100 21127644
chr10 88714266 88714275 POU5F1B JASPAR yes 88718375 4100 21127645
chr10 88714294 88714300 MZF1 JASPAR yes 88718375 4075 21127646
chr10 88714303 88714314 NFKB1 JASPAR yes 88718375 4061 21127647
chr10 88714304 88714314 REL JASPAR yes 88718375 4061 21127648
chr10 88714308 88714313 SP1 TRANSFAC yes 88718375 4062 21127649
chr10 88714314 88714325 EBF1 JASPAR yes 88718375 4050 21127650
chr10 88714319 88714324 SP1 TRANSFAC yes 88718375 4051 21127651
chr10 88714333 88714338 ETS2 TRANSFAC yes 88718375 4037 21127652
chr10 88714339 88714344 ETS2 TRANSFAC yes 88718375 4031 21127653
chr10 88714342 88714347 ETS2 TRANSFAC yes 88718375 4028 21127654
chr10 88714342 88714350 EHF JASPAR yes 88718375 4025 21127655
SNPs associated with SNCG[ENSG00000173267.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr10 89615451 rs1234222 C T 892434 Esophagus 0.286923 1558973
chr10 88734739 rs4934283 A G 11722 Esophagus 0.000192277 1555682
chr10 89468389 rs11202522 G T 745372 Heart 0.0247647 1558564
chr10 88428315 rs2803557 A G 290060 Heart 0.0170673 1553277
chr10 88698712 rs11202269 G C 19663 Thyroid 1.77077e-06 1555393
chr10 88708508 rs4478896 C T 9867 Lung 0.00344663 1555447
Details of SNCG[ENSG00000173267.9]
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Genomic Location chr10:88718375-88723017[+]
TSS 88718375
Gene Name SNCG
Ensembl ID ENSG00000173267.9
ENTREZID 6623
Uniprot
Q6FHG5
O76070
F8W754
Protein Name
Gamma-synuclein
Expression levels of SNCG[ENSG00000173267.9]
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