EnhancerDB
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  3. LRFN4[ENSG00000173621.8]
Enhancers that regulate LRFN4[ENSG00000173621.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr11 66530765 66538519 enh1839 66624118 85599
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Esophagus Bone (Osteoblast) Blood (Karpas-422)
chr11 66546265 66555235 enh1840 66624118 68883
Prostate (PC-3) Placenta Blood (Karpas-422) Epithelial (MCF-7)
chr11 66558205 66566489 enh1841 66624118 57629
Blood (OCI-LY7) Blood (Karpas-422)
chr11 66573945 66580221 enh67816 66624118 43897
Peripheral Blood (MM.1S) Neural Stem Cells (H9)
chr11 66599345 66605135 enh1842 66624118 18983
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (Karpas-422) Lung (PC-9) Spleen Epithelial (MCF-7)
chr11 66629023 66633637 enh60297 66624118 4905
Blood (OCI-LY7)
chr11 66632141 66632247 vista10667 66624118 8023
VISTA
chr11 66643125 66662804 enh1843 66624118 19007
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr11 66659730 66659912 vista10668 66624118 35612
VISTA
chr11 66667445 66674831 enh50859 66624118 43327
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Colon (HCT116) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Stomach
chr11 66677912 66691136 enh57584 66624118 53794
Bone Marrow (K562) Liver (HepG2) Lung (A549) Muscle (A673) Neural Stem Cells (H9) Stomach
chr11 66687548 66687652 vista10669 66624118 63430
VISTA
chr11 66694577 66706935 enh14010 66624118 70459
Bone Marrow (K562) Cervix (HeLa-S3) Liver (HepG2) Placenta Muscle (Myotube)
chr11 66697442 66697531 vista10670 66624118 73324
VISTA
chr11 66715574 66719895 enh14011 66624118 91456
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Lung (PC-9) Muscle (Myotube) Epithelial (MCF-7)
chr11 66717584 66717809 vista10671 66624118 93466
VISTA
Transcript facotrs that regulate LRFN4[ENSG00000173621.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr11 66629042 66629057 HNF4G JASPAR yes 66624118 4924 39383473
chr11 66629043 66629058 HNF4A JASPAR yes 66624118 4925 39383474
chr11 66629048 66629060 HINFP JASPAR yes 66624118 4930 39383475
chr11 66629051 66629055 H4TF2 TRANSFAC yes 66624118 4933 39383476
chr11 66629072 66629077 TFAP2A TRANSFAC yes 66624118 4954 39383477
chr11 66629072 66629078 MZF1 JASPAR yes 66624118 4954 39383478
chr11 66629086 66629107 ZNF263 JASPAR yes 66624118 4968 39383479
chr11 66629095 66629105 SP1 JASPAR yes 66624118 4977 39383480
chr11 66629097 66629102 SP1 TRANSFAC yes 66624118 4979 39383481
chr11 66629098 66629103 SP1 TRANSFAC yes 66624118 4980 39383482
chr11 66629098 66629104 SP1 TRANSFAC yes 66624118 4980 39383483
chr11 66629099 66629107 SP1 TRANSFAC yes 66624118 4981 39383484
chr11 66629099 66629107 WT1 TRANSFAC yes 66624118 4981 39383485
chr11 66629099 66629110 NRF1 JASPAR yes 66624118 4981 39383486
chr11 66629101 66629122 ZNF263 JASPAR yes 66624118 4983 39383487
chr11 66629116 66629121 SP1 TRANSFAC yes 66624118 4998 39383488
SNPs associated with LRFN4[ENSG00000173621.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr11 66650060 rs10896139 C T 22114 Esophagus 0.122047 2054067
chr11 66628249 rs2513658 G A 303 Esophagus 0.000106436 2053911
chr11 66623500 rs398097591 C CCT 618 Esophagus 0.000160444 2053895
chr11 66551143 rs6591222 C T 72975 Heart 0.2349 2053633
chr11 66662731 rs7122539 G A 34785 Heart 0.000478067 2054215
chr11 66623500 rs398097591 C CCT 618 Pancreas 9.41303e-05 2053895
chr11 66623500 rs398097591 C CCT 618 Spleen 4.05009e-06 2053895
chr11 66623500 rs398097591 C CCT 618 Thyroid 5.58441e-09 2053895
chr11 66623500 rs398097591 C CCT 618 Lung 0.000501563 2053895
chr11 66650060 rs10896139 C T 22114 Stomach 1.31493e-09 2054067
chr11 65870426 rs55944083 C T 753692 Adrenal 0.331743 2050954
Details of LRFN4[ENSG00000173621.8]
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Genomic Location chr11:66624118-66627946[+]
TSS 66624118
Gene Name LRFN4
Ensembl ID ENSG00000173621.8
ENTREZID 78999
Uniprot
Q6PJG9
A0A024R5I6
Protein Name
isoform CRA_a
LRFN4 protein
Leucine rich repeat and fibronectin type III domain containing 4
Leucine-rich repeat and fibronectin type-III domain-containing protein 4
Expression levels of LRFN4[ENSG00000173621.8]
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