EnhancerDB
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Enhancers that regulate RTN4RL2[ENSG00000186907.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr11 57118645 57129995 enh43545 57228022 98027
Bone Marrow (K562) Skin (Keratinocyte) Cervix (HeLa-S3) Pancreas Muscle (Myotube) Neural Stem Cells (H9)
chr11 57138383 57142877 enh64472 57228022 85145
Heart
chr11 57164805 57172685 enh79898 57228022 55337
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Colon (HCT116) Lung (PC-9) Epithelial (MCF-7)
chr11 57173048 57173332 vista10344 57228022 54690
VISTA
chr11 57173815 57174163 vista10345 57228022 53859
VISTA
chr11 57198205 57214175 enh43546 57228022 13847
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Esophagus Liver Bone (Osteoblast) Stomach Thyroid Lung (PC-9) Breast Muscle (Myotube) Epithelial (MCF-7)
chr11 57199694 57199869 vista10346 57228022 28153
VISTA
chr11 57200214 57200547 vista10347 57228022 27475
VISTA
chr11 57224938 57225034 vista10348 57228022 2988
VISTA
chr11 57232201 57232685 vista10349 57228022 4179
VISTA
chr11 57239065 57243235 enh74809 57228022 11043
Muscle (A673) Brain (SK-N-MC)
chr11 57242995 57243389 vista10350 57228022 14973
VISTA
chr11 57245821 57250315 enh60292 57228022 17799
Liver (HepG2) Blood (OCI-LY7) Stomach
chr11 57259005 57267035 enh87875 57228022 30983
Pancreas Liver (HepG2)
chr11 57269501 57269878 vista10351 57228022 41479
VISTA
chr11 57270085 57278275 enh92298 57228022 42063
Liver (HepG2)
chr11 57288913 57293063 enh67806 57228022 60891
Neural Stem Cells (H9)
chr11 57324540 57324747 vista10352 57228022 96518
VISTA
Transcript facotrs that regulate RTN4RL2[ENSG00000186907.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr11 57224116 57225358 ZBTB33 GTRD no Lung (A549) 57228022 2664 107970503
chr11 57224462 57224981 ZNF274 GTRD no Liver (HepG2) 57228022 3041 107970504
chr11 57224530 57225010 ZBTB33 GTRD no Lung (A549) 57228022 3012 107970505
chr11 57224534 57224999 TEF1 GTRD no Bone (Osteoblast) 57228022 3023 107970506
chr11 57224584 57225050 ZNF274 GTRD no Cervix (HeLa-S3) 57228022 2972 107970507
chr11 57224617 57225034 ZBTB33 GTRD no Lung (A549) 57228022 2988 107970508
chr11 57224650 57224989 ZBTB33 GTRD no Lung (A549) 57228022 3033 107970509
chr11 57224721 57225241 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2781 107970510
chr11 57224731 57225007 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 3015 107970511
chr11 57224741 57225197 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2825 107970512
chr11 57224753 57224997 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 3025 107970513
chr11 57224771 57225193 CTCF UCSC Txn Factor no Conserved 57228022 2829 107970514
chr11 57224779 57225155 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2867 107970515
chr11 57224780 57225150 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2872 107970516
chr11 57224789 57225253 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 57228022 2769 107970517
chr11 57224798 57225234 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2788 107970518
chr11 57224802 57225172 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2850 107970519
chr11 57224807 57225127 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2895 107970520
chr11 57224811 57225135 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2887 107970521
chr11 57224819 57225143 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2879 107970522
chr11 57224822 57225078 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2944 107970523
chr11 57224823 57225113 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2909 107970524
chr11 57224825 57225161 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 57228022 2861 107970525
chr11 57224825 57225261 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2761 107970526
chr11 57224829 57225159 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2863 107970527
chr11 57224831 57225111 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 57228022 2911 107970528
chr11 57224833 57225113 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2909 107970529
chr11 57224833 57225123 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2899 107970530
chr11 57224834 57225144 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2878 107970531
chr11 57224837 57225127 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2895 107970532
chr11 57224838 57225108 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57228022 2914 107970533
chr11 57224838 57225118 SMC3 UCSC Txn Factor no Conserved 57228022 2904 107970534
chr11 57224848 57225118 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2904 107970535
chr11 57224853 57225117 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2905 107970536
chr11 57224857 57225233 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57228022 2789 107970537
chr11 57224863 57225105 RAD21 UCSC Txn Factor no Conserved 57228022 2917 107970538
chr11 57224864 57225085 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 57228022 2937 107970539
chr11 57224865 57225076 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 57228022 2946 107970540
chr11 57224866 57225096 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 57228022 2926 107970541
chr11 57224866 57225103 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2919 107970542
chr11 57224870 57225093 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2929 107970543
chr11 57224871 57225104 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57228022 2918 107970544
chr11 57224872 57225082 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 57228022 2940 107970545
chr11 57224881 57225074 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 57228022 2948 107970546
chr11 57224885 57225086 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2936 107970547
chr11 57224889 57225056 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2966 107970548
chr11 57224889 57225076 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2946 107970549
chr11 57224892 57225068 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 57228022 2954 107970550
chr11 57224895 57225065 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 2957 107970551
chr11 57224897 57225060 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57228022 2962 107970552
chr11 57224898 57225158 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57228022 2864 107970553
chr11 57224912 57225082 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 57228022 2940 107970554
chr11 57224915 57225175 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57228022 2847 107970555
chr11 57224916 57225068 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 57228022 2954 107970556
chr11 57224931 57225007 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 3015 107970557
chr11 57224934 57225544 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2478 107970558
chr11 57224943 57224957 EBF1 JASPAR yes 57228022 3065 114073569
chr11 57224953 57225533 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 2489 107970559
chr11 57224961 57224967 ZNF354C JASPAR yes 57228022 3055 114073570
chr11 57224963 57224977 PLAG1 JASPAR yes 57228022 3045 114073571
chr11 57224970 57224989 CTCF JASPAR yes 57228022 3033 114073572
chr11 57224980 57224986 SP1 TRANSFAC yes 57228022 3036 114073573
chr11 57224981 57224986 SP1 TRANSFAC yes 57228022 3036 114073574
chr11 57224982 57224987 SP1 TRANSFAC yes 57228022 3035 114073575
chr11 57224987 57225008 REST JASPAR yes 57228022 3014 114073576
chr11 57224988 57225007 REST JASPAR yes 57228022 3015 114073577
chr11 57225013 57225033 RREB1 JASPAR yes 57228022 2989 114073578
chr11 57231946 57232236 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 3924 107970560
chr11 57231956 57232246 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 3934 107970561
chr11 57232205 57232225 RREB1 JASPAR yes 57228022 4183 114073579
chr11 57232208 57232223 RUNX2 JASPAR yes 57228022 4186 114073580
chr11 57232238 57232242 H4TF2 TRANSFAC yes 57228022 4216 114073581
chr11 57232240 57232246 MZF1 JASPAR yes 57228022 4218 114073582
chr11 57232262 57232281 REST JASPAR yes 57228022 4240 114073583
chr11 57232285 57232298 SMAD2 JASPAR yes 57228022 4263 114073584
chr11 57232292 57232616 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 4270 107970562
chr11 57232310 57232317 USF1 JASPAR yes 57228022 4288 114073585
chr11 57232310 57232320 MAX JASPAR yes 57228022 4288 114073586
chr11 57232311 57232316 MYC TRANSFAC yes 57228022 4289 114073587
chr11 57232311 57232316 USF1 TRANSFAC yes 57228022 4289 114073588
chr11 57232311 57232316 USF2 TRANSFAC yes 57228022 4289 114073589
chr11 57232311 57232318 USF1 JASPAR yes 57228022 4289 114073590
chr11 57232313 57232593 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 4291 107970563
chr11 57232323 57232587 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57228022 4301 107970564
chr11 57232331 57232346 PRDM1 JASPAR yes 57228022 4309 114073591
chr11 57232331 57232346 STAT2 JASPAR yes 57228022 4309 114073592
chr11 57232360 57232375 NR2C2 JASPAR yes 57228022 4338 114073593
chr11 57232361 57232581 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 4339 107970565
chr11 57232362 57232371 SP1 TRANSFAC yes 57228022 4340 114073594
chr11 57232362 57232372 SP1 JASPAR yes 57228022 4340 114073595
chr11 57232362 57232383 ZNF263 JASPAR yes 57228022 4340 114073596
chr11 57232364 57232370 MAZ TRANSFAC yes 57228022 4342 114073597
chr11 57232364 57232465 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 4342 107970566
chr11 57232365 57232375 MZF1 JASPAR yes 57228022 4343 114073598
chr11 57232387 57232399 EHF JASPAR yes 57228022 4365 114073599
chr11 57232387 57232399 ELF4 JASPAR yes 57228022 4365 114073600
chr11 57232388 57232400 HINFP JASPAR yes 57228022 4366 114073601
chr11 57232396 57232406 TBX21 JASPAR yes 57228022 4374 114073602
chr11 57232396 57232407 TBX20 JASPAR yes 57228022 4374 114073603
chr11 57232396 57232407 TBX2 JASPAR yes 57228022 4374 114073604
chr11 57232396 57232409 EOMES JASPAR yes 57228022 4374 114073605
chr11 57232397 57232405 MGA JASPAR yes 57228022 4375 114073606
chr11 57232397 57232407 TBR1 JASPAR yes 57228022 4375 114073607
chr11 57232414 57232532 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57228022 4392 107970567
chr11 57232422 57232433 NFE2L2 JASPAR yes 57228022 4400 114073608
chr11 57232436 57232447 NFIL3 JASPAR yes 57228022 4414 114073609
chr11 57232437 57232448 CEBPB JASPAR yes 57228022 4415 114073610
chr11 57232437 57232449 DBP JASPAR yes 57228022 4415 114073611
chr11 57232437 57232449 HLF JASPAR yes 57228022 4415 114073612
chr11 57232437 57232449 JDP2 JASPAR yes 57228022 4415 114073613
chr11 57232437 57232449 TEF JASPAR yes 57228022 4415 114073614
chr11 57232437 57232450 ATF4 JASPAR yes 57228022 4415 114073615
chr11 57232437 57232452 JUND JASPAR yes 57228022 4415 114073616
chr11 57232438 57232451 JUN JASPAR yes 57228022 4416 114073617
chr11 57232440 57232453 EOMES JASPAR yes 57228022 4418 114073618
chr11 57232442 57232453 TBX20 JASPAR yes 57228022 4420 114073619
chr11 57232443 57232453 TBX21 JASPAR yes 57228022 4421 114073620
chr11 57232444 57232452 MGA JASPAR yes 57228022 4422 114073621
chr11 57232444 57232452 TBX15 JASPAR yes 57228022 4422 114073622
chr11 57232444 57232452 TBX1 JASPAR yes 57228022 4422 114073623
chr11 57232444 57232452 TBX4 JASPAR yes 57228022 4422 114073624
chr11 57232444 57232452 TBX5 JASPAR yes 57228022 4422 114073625
chr11 57232448 57232458 SP1 JASPAR yes 57228022 4426 114073626
chr11 57232467 57232472 SP1 TRANSFAC yes 57228022 4445 114073627
chr11 57232492 57232507 AR JASPAR yes 57228022 4470 114073628
chr11 57232538 57232543 SP1 TRANSFAC yes 57228022 4516 114073629
chr11 57232538 57232545 SP1 TRANSFAC yes 57228022 4516 114073630
chr11 57232538 57232548 SP1 JASPAR yes 57228022 4516 114073631
chr11 57232538 57232556 ESR1 JASPAR yes 57228022 4516 114073632
chr11 57232556 57232561 SP1 TRANSFAC yes 57228022 4534 114073633
chr11 57232559 57232564 SP1 TRANSFAC yes 57228022 4537 114073634
chr11 57232593 57232599 ZNF354C JASPAR yes 57228022 4571 114073635
chr11 57232607 57232616 ZEB1 JASPAR yes 57228022 4585 114073636
chr11 57232608 57232618 ID4 JASPAR yes 57228022 4586 114073637
chr11 57232608 57232618 NHLH1 JASPAR yes 57228022 4586 114073638
chr11 57232608 57232618 TCF3 JASPAR yes 57228022 4586 114073639
chr11 57232608 57232618 TCF4 JASPAR yes 57228022 4586 114073640
chr11 57232609 57232618 SNAI2 JASPAR yes 57228022 4587 114073641
chr11 57232610 57232615 USF2 TRANSFAC yes 57228022 4588 114073642
chr11 57232617 57232636 CTCF JASPAR yes 57228022 4595 114073643
chr11 57232626 57232637 EBF1 JASPAR yes 57228022 4604 114073644
chr11 57232631 57232652 ZNF263 JASPAR yes 57228022 4609 114073645
chr11 57232634 57232640 PEA3 TRANSFAC yes 57228022 4612 114073646
chr11 57232646 57232650 LFA1 TRANSFAC yes 57228022 4624 114073647
chr11 57232646 57232658 NHLH1 JASPAR yes 57228022 4624 114073648
chr11 57232647 57232657 NHLH1 JASPAR yes 57228022 4625 114073649
chr11 57232674 57232679 SP1 TRANSFAC yes 57228022 4652 114073650
chr11 57232679 57232683 NFE TRANSFAC yes 57228022 4657 114073651
SNPs associated with RTN4RL2[ENSG00000186907.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr11 56483227 rs11228739 C A,T 744795 Esophagus 0.236507 2006112
chr11 57665336 rs674094 A C,T 420329 Esophagus 0.319159 2010756
chr11 57202184 rs2250887 G A 25838 Heart 0.000822426 2009030
chr11 57128136 rs11229011 G A 99886 Pancreas 0.0026753 2008715
chr11 57989090 rs3853679 A G,T 744083 Spleen 0.215804 2011704
chr11 56886503 rs10896571 T C 341519 Ovary 0.279858 2007092
chr11 56653038 rs17151327 C G 574984 Uterus 0.175061 2006459
chr11 57202260 rs57943997 A T 25762 Thyroid 2.56411e-07 2009032
chr11 57320841 rs11603817 C T 75834 Stomach 0.218691 2009671
Details of RTN4RL2[ENSG00000186907.3]
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Genomic Location chr11:57228022-57245007[+]
TSS 57228022
Gene Name RTN4RL2
Ensembl ID ENSG00000186907.3
ENTREZID 349667
Uniprot
Q86UN3
Protein Name
isoform CRA_a
Reticulon 4 receptor-like 2
Reticulon 4 receptor-like 2
Reticulon-4 receptor-like 2
Expression levels of RTN4RL2[ENSG00000186907.3]
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