EnhancerDB
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Enhancers that regulate CPNE4[ENSG00000196353.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 131904685 131908835 enh105382 132004254 95419
Peripheral Blood (MM.1S)
chr3 131919465 131933035 enh101768 132004254 71219
Thyroid Brain (SK-N-MC) Lung (PC-9)
chr3 131937885 131946923 enh70846 132004254 57331
Thyroid Prostate (PC-3) Neural Stem Cells (H9) Lung (PC-9)
chr3 131947125 131952815 enh20937 132004254 51439
Placenta Lung (PC-9)
chr3 131953665 131958395 enh101769 132004254 45859
Thyroid Peripheral Blood (MM.1S)
chr3 131961725 131966795 enh105383 132004254 37459
Peripheral Blood (MM.1S)
chr3 131961835 131962144 vista42452 132004254 42110
VISTA
chr3 131970165 131978115 enh20938 132004254 26139
Prostate (PC-3) Brain (SK-N-MC) Astrocyte Placenta Thyroid Lung (PC-9) Muscle (Myoblast) Epithelial (MCF-7)
chr3 131978985 131990075 enh54350 132004254 14179
Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Lung (PC-9) Stomach
chr3 131990485 131997275 enh97351 132004254 6979
Stomach Epithelial (MCF-7)
chr3 132002464 132002523 vista42453 132004254 1731
VISTA
chr3 132007785 132015335 enh77072 132004254 3531
Muscle (A673)
chr3 132020285 132025495 enh20939 132004254 16031
Placenta Large Intestine
chr3 132030632 132030644 vista42454 132004254 26378
VISTA
chr3 132041925 132046807 enh20940 132004254 37671
Placenta Uterus Blood (OCI-LY7) Stomach
chr3 132059165 132068235 enh35879 132004254 54911
Esophagus Astrocyte Lung (PC-9) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr3 132093991 132107735 enh45509 132004254 89737
Prostate (RWPE1) Peripheral Blood (MM.1S) Embryonic Stem Cell Line (H1-hESC) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript facotrs that regulate CPNE4[ENSG00000196353.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 132002470 132002491 IRF1 JASPAR yes 132004254 1763 71053047
chr3 132002476 132002495 REST JASPAR yes 132004254 1759 71053048
chr3 132002500 132002508 FOXO3 JASPAR yes 132004254 1746 71053049
chr3 132002502 132002523 ZNF263 JASPAR yes 132004254 1731 71053050
chr3 132002510 132002516 SP1 TRANSFAC yes 132004254 1738 71053051
chr3 132002510 132002520 SP1 JASPAR yes 132004254 1734 71053052
chr3 132007806 132007811 MYB TRANSFAC yes 132004254 3552 5784953
chr3 132007893 132007898 MYB TRANSFAC yes 132004254 3639 5784954
chr3 132007934 132007939 ATF1 TRANSFAC yes 132004254 3680 5784955
chr3 132007959 132007974 LEF1 JASPAR yes 132004254 3705 5784956
chr3 132007966 132007987 IRF1 JASPAR yes 132004254 3712 5784957
chr3 132007968 132007983 PRDM1 JASPAR yes 132004254 3714 5784958
chr3 132007974 132007989 PRDM1 JASPAR yes 132004254 3720 5784959
chr3 132007982 132007988 TCF4 TRANSFAC yes 132004254 3728 5784960
chr3 132007992 132007995 MYB TRANSFAC yes 132004254 3738 5784961
chr3 132008002 132008020 NR3C1 JASPAR yes 132004254 3748 5784962
chr3 132008010 132008014 YY1 TRANSFAC yes 132004254 3756 5784963
chr3 132008014 132008019 ETS2 TRANSFAC yes 132004254 3760 5784964
chr3 132008021 132008035 IRF7 JASPAR yes 132004254 3767 5784965
chr3 132008024 132008035 BATF JASPAR yes 132004254 3770 5784966
chr3 132008024 132008035 DUX4 JASPAR yes 132004254 3770 5784967
chr3 132008026 132008037 FOS JASPAR yes 132004254 3772 5784968
chr3 132008026 132008037 FOSL1 JASPAR yes 132004254 3772 5784969
chr3 132008026 132008037 JUND JASPAR yes 132004254 3772 5784970
chr3 132008028 132008034 JUN TRANSFAC yes 132004254 3774 5784971
chr3 132008033 132008046 DUXA JASPAR yes 132004254 3779 5784972
chr3 132008034 132008045 DUX4 JASPAR yes 132004254 3780 5784973
chr3 132008034 132008045 PHOX2A JASPAR yes 132004254 3780 5784974
chr3 132008034 132008045 PROP1 JASPAR yes 132004254 3780 5784975
chr3 132008038 132008051 DUXA JASPAR yes 132004254 3784 5784976
chr3 132008039 132008050 DUX4 JASPAR yes 132004254 3785 5784977
chr3 132008045 132008050 H4TF1 TRANSFAC yes 132004254 3791 5784978
chr3 132008066 132008071 ETS2 TRANSFAC yes 132004254 3812 5784979
chr3 132008095 132008109 TCF7L2 JASPAR yes 132004254 3841 5784980
chr3 132008099 132008105 TCF1 TRANSFAC yes 132004254 3845 5784981
chr3 132008141 132008145 ESR1 TRANSFAC yes 132004254 3887 5784982
chr3 132008152 132008156 YY1 TRANSFAC yes 132004254 3898 5784983
chr3 132008165 132008177 GLI2 JASPAR yes 132004254 3911 5784984
chr3 132008190 132008196 NFIC JASPAR yes 132004254 3936 5784985
chr3 132008204 132008208 TEAD2 TRANSFAC yes 132004254 3950 5784986
chr3 132008204 132008209 TBP TRANSFAC yes 132004254 3950 5784987
chr3 132008204 132008210 TFIID TRANSFAC yes 132004254 3950 5784988
chr3 132008206 132008212 TBP TRANSFAC yes 132004254 3952 5784989
chr3 132008211 132008222 ESRRB JASPAR yes 132004254 3957 5784990
chr3 132008236 132008246 TBX21 JASPAR yes 132004254 3982 5784991
chr3 132008236 132008247 TBX20 JASPAR yes 132004254 3982 5784992
chr3 132008236 132008247 TBX2 JASPAR yes 132004254 3982 5784993
chr3 132008236 132008249 EOMES JASPAR yes 132004254 3982 5784994
chr3 132008237 132008245 MGA JASPAR yes 132004254 3983 5784995
chr3 132008237 132008245 TBX15 JASPAR yes 132004254 3983 5784996
chr3 132008237 132008245 TBX1 JASPAR yes 132004254 3983 5784997
chr3 132008237 132008245 TBX4 JASPAR yes 132004254 3983 5784998
chr3 132008237 132008245 TBX5 JASPAR yes 132004254 3983 5784999
chr3 132008237 132008247 TBR1 JASPAR yes 132004254 3983 5785000
chr3 132008242 132008262 TP53 JASPAR yes 132004254 3988 5785001
chr3 132008266 132008286 TP53 JASPAR yes 132004254 4012 5785002
chr3 132008272 132008281 THAP1 JASPAR yes 132004254 4018 5785003
chr3 132008275 132008285 HOXB13 JASPAR yes 132004254 4021 5785004
chr3 132008339 132008351 HNF1B JASPAR yes 132004254 4085 5785005
chr3 132008346 132008360 TLX1 JASPAR yes 132004254 4092 5785006
chr3 132008347 132008362 TFAP2A JASPAR yes 132004254 4093 5785007
chr3 132008358 132008368 TEAD1 JASPAR yes 132004254 4104 5785008
chr3 132008358 132008368 TEAD4 JASPAR yes 132004254 4104 5785009
chr3 132008380 132008391 FOSL2 JASPAR yes 132004254 4126 5785010
chr3 132008380 132008391 JUNB JASPAR yes 132004254 4126 5785011
chr3 132008380 132008395 TP53 JASPAR yes 132004254 4126 5785012
chr3 132008381 132008392 FOS JASPAR yes 132004254 4127 5785013
chr3 132008381 132008392 FOSL1 JASPAR yes 132004254 4127 5785014
chr3 132008382 132008393 NFE2L2 JASPAR yes 132004254 4128 5785015
chr3 132008415 132008419 YY1 TRANSFAC yes 132004254 4161 5785016
chr3 132008436 132008443 SPIB JASPAR yes 132004254 4182 5785017
chr3 132008452 132008466 GLIS3 JASPAR yes 132004254 4198 5785018
chr3 132008454 132008466 YY1 JASPAR yes 132004254 4200 5785019
chr3 132008459 132008463 YY1 TRANSFAC yes 132004254 4205 5785020
chr3 132008470 132008474 NFE TRANSFAC yes 132004254 4216 5785021
chr3 132008511 132008515 H1TF2 TRANSFAC yes 132004254 4257 5785022
chr3 132008511 132008515 NFE TRANSFAC yes 132004254 4257 5785023
chr3 132008511 132008515 SRF TRANSFAC yes 132004254 4257 5785024
chr3 132008515 132008536 ZNF263 JASPAR yes 132004254 4261 5785025
chr3 132008516 132008537 ZNF263 JASPAR yes 132004254 4262 5785026
chr3 132008518 132008539 ZNF263 JASPAR yes 132004254 4264 5785027
chr3 132008521 132008542 ZNF263 JASPAR yes 132004254 4267 5785028
chr3 132008522 132008543 ZNF263 JASPAR yes 132004254 4268 5785029
chr3 132008527 132008542 PRDM1 JASPAR yes 132004254 4273 5785030
chr3 132008528 132008542 STAT1 JASPAR yes 132004254 4274 5785031
chr3 132008556 132008560 YY1 TRANSFAC yes 132004254 4302 5785032
chr3 132008569 132008584 PRDM1 JASPAR yes 132004254 4315 5785033
chr3 132008571 132008592 ZNF263 JASPAR yes 132004254 4317 5785034
chr3 132008572 132008583 E2F6 JASPAR yes 132004254 4318 5785035
chr3 132008598 132008602 YY1 TRANSFAC yes 132004254 4344 5785036
chr3 132008627 132008630 MYB TRANSFAC yes 132004254 4373 5785037
chr3 132008630 132008634 NFE TRANSFAC yes 132004254 4376 5785038
chr3 132008633 132008643 NFIA JASPAR yes 132004254 4379 5785039
chr3 132008635 132008641 NFIC JASPAR yes 132004254 4381 5785040
chr3 132008639 132008643 YY1 TRANSFAC yes 132004254 4385 5785041
chr3 132008654 132008672 NFYA JASPAR yes 132004254 4400 5785042
chr3 132008671 132008674 MYB TRANSFAC yes 132004254 4417 5785043
chr3 132008677 132008694 RARA JASPAR yes 132004254 4423 5785044
chr3 132008677 132008694 RXRA JASPAR yes 132004254 4423 5785045
chr3 132008683 132008687 LFA1 TRANSFAC yes 132004254 4429 5785046
chr3 132008686 132008697 FOXA1 JASPAR yes 132004254 4432 5785047
chr3 132008693 132008703 MSC JASPAR yes 132004254 4439 5785048
chr3 132008704 132008721 BCL6B JASPAR yes 132004254 4450 5785049
chr3 132008706 132008710 NFE TRANSFAC yes 132004254 4452 5785050
chr3 132008718 132008726 MGA JASPAR yes 132004254 4464 5785051
chr3 132008740 132008751 GCM1 JASPAR yes 132004254 4486 5785052
chr3 132008747 132008756 SOX9 JASPAR yes 132004254 4493 5785053
chr3 132008755 132008765 SP1 JASPAR yes 132004254 4501 5785054
chr3 132008758 132008768 MZF1 JASPAR yes 132004254 4504 5785055
chr3 132008763 132008778 HSF1 JASPAR yes 132004254 4509 5785056
chr3 132008764 132008777 HSF1 JASPAR yes 132004254 4510 5785057
chr3 132008764 132008777 HSF2 JASPAR yes 132004254 4510 5785058
chr3 132008764 132008777 HSF4 JASPAR yes 132004254 4510 5785059
chr3 132008769 132008782 HSF2 JASPAR yes 132004254 4515 5785060
chr3 132008773 132008787 ONECUT1 JASPAR yes 132004254 4519 5785061
chr3 132008773 132008787 ONECUT2 JASPAR yes 132004254 4519 5785062
chr3 132008773 132008787 ONECUT3 JASPAR yes 132004254 4519 5785063
chr3 132008775 132008787 FOXC2 JASPAR yes 132004254 4521 5785064
chr3 132008775 132008791 POU4F3 JASPAR yes 132004254 4521 5785065
chr3 132008775 132008793 RARA JASPAR yes 132004254 4521 5785066
chr3 132008776 132008786 CUX2 JASPAR yes 132004254 4522 5785067
chr3 132008777 132008791 POU4F1 JASPAR yes 132004254 4523 5785068
chr3 132008777 132008792 HNF1A JASPAR yes 132004254 4523 5785069
chr3 132008778 132008791 HNF1B JASPAR yes 132004254 4524 5785070
chr3 132008778 132008792 POU4F1 JASPAR yes 132004254 4524 5785071
chr3 132008778 132008794 POU4F2 JASPAR yes 132004254 4524 5785072
chr3 132008778 132008794 POU4F3 JASPAR yes 132004254 4524 5785073
chr3 132008784 132008794 HOXB13 JASPAR yes 132004254 4530 5785074
chr3 132008792 132008796 H4TF2 TRANSFAC yes 132004254 4538 5785075
chr3 132008803 132008815 GRHL1 JASPAR yes 132004254 4549 5785076
chr3 132008804 132008807 MYB TRANSFAC yes 132004254 4550 5785077
chr3 132008806 132008818 FOXI1 JASPAR yes 132004254 4552 5785078
chr3 132008820 132008825 MYB TRANSFAC yes 132004254 4566 5785079
chr3 132008823 132008838 FOXP1 JASPAR yes 132004254 4569 5785080
chr3 132008824 132008845 IRF1 JASPAR yes 132004254 4570 5785081
chr3 132008824 132008845 ZNF263 JASPAR yes 132004254 4570 5785082
chr3 132008826 132008837 FOXP2 JASPAR yes 132004254 4572 5785083
chr3 132008827 132008835 FOXO3 JASPAR yes 132004254 4573 5785084
chr3 132008854 132008869 MEF2A JASPAR yes 132004254 4600 5785085
chr3 132008855 132008867 MEF2A JASPAR yes 132004254 4601 5785086
chr3 132008855 132008867 MEF2B JASPAR yes 132004254 4601 5785087
chr3 132008855 132008867 MEF2D JASPAR yes 132004254 4601 5785088
chr3 132008856 132008866 MEF2A JASPAR yes 132004254 4602 5785089
chr3 132008857 132008861 YY1 TRANSFAC yes 132004254 4603 5785090
chr3 132008874 132008879 MYB TRANSFAC yes 132004254 4620 5785091
chr3 132008902 132008917 RFX5 JASPAR yes 132004254 4648 5785092
chr3 132008909 132008919 NFKB1 JASPAR yes 132004254 4655 5785093
chr3 132008945 132008957 ZBTB7B JASPAR yes 132004254 4691 5785094
chr3 132008962 132008976 FOXF2 JASPAR yes 132004254 4708 5785095
chr3 132008963 132008971 FOXG1 JASPAR yes 132004254 4709 5785096
chr3 132008964 132008975 HOXA10 JASPAR yes 132004254 4710 5785097
chr3 132008965 132008974 CDX1 JASPAR yes 132004254 4711 5785098
chr3 132008965 132008976 CDX2 JASPAR yes 132004254 4711 5785099
chr3 132008990 132008997 NKX3-1 JASPAR yes 132004254 4736 5785100
chr3 132008995 132008999 TEAD2 TRANSFAC yes 132004254 4741 5785101
chr3 132008997 132009000 MYB TRANSFAC yes 132004254 4743 5785102
chr3 132008998 132009008 OLIG3 JASPAR yes 132004254 4744 5785103
chr3 132009004 132009009 ETS2 TRANSFAC yes 132004254 4750 5785104
chr3 132009010 132009013 MYB TRANSFAC yes 132004254 4756 5785105
chr3 132009010 132009026 SOX4 JASPAR yes 132004254 4756 5785106
chr3 132009011 132009026 SOX21 JASPAR yes 132004254 4757 5785107
chr3 132009011 132009027 SOX4 JASPAR yes 132004254 4757 5785108
chr3 132009021 132009029 RHOXF1 JASPAR yes 132004254 4767 5785109
chr3 132009063 132009067 YY1 TRANSFAC yes 132004254 4809 5785110
chr3 132009063 132009078 STAT1 JASPAR yes 132004254 4809 5785111
chr3 132009064 132009072 FEV JASPAR yes 132004254 4810 5785112
chr3 132009065 132009076 STAT3 JASPAR yes 132004254 4811 5785113
chr3 132009071 132009086 PRDM1 JASPAR yes 132004254 4817 5785114
chr3 132009081 132009094 NFKB1 JASPAR yes 132004254 4827 5785115
chr3 132009083 132009093 NFKB1 JASPAR yes 132004254 4829 5785116
chr3 132009083 132009094 NFKB1 JASPAR yes 132004254 4829 5785117
chr3 132009096 132009100 YY1 TRANSFAC yes 132004254 4842 5785118
chr3 132009099 132009103 TEAD2 TRANSFAC yes 132004254 4845 5785119
chr3 132009099 132009116 NR3C1 JASPAR yes 132004254 4845 5785120
chr3 132009099 132009116 NR3C2 JASPAR yes 132004254 4845 5785121
chr3 132009101 132009104 MYB TRANSFAC yes 132004254 4847 5785122
chr3 132009101 132009116 AR JASPAR yes 132004254 4847 5785123
chr3 132009102 132009113 SPDEF JASPAR yes 132004254 4848 5785124
chr3 132009104 132009111 PEA3 TRANSFAC yes 132004254 4850 5785125
chr3 132009117 132009121 NFE TRANSFAC yes 132004254 4863 5785126
chr3 132009122 132009128 YY1 JASPAR yes 132004254 4868 5785127
chr3 132009132 132009142 TEAD1 JASPAR yes 132004254 4878 5785128
chr3 132009132 132009142 TEAD4 JASPAR yes 132004254 4878 5785129
chr3 132009133 132009141 TEAD3 JASPAR yes 132004254 4879 5785130
chr3 132009136 132009141 ETS2 TRANSFAC yes 132004254 4882 5785131
chr3 132009197 132009201 H4TF2 TRANSFAC yes 132004254 4943 5785132
chr3 132009200 132009204 H1TF2 TRANSFAC yes 132004254 4946 5785133
chr3 132009200 132009204 NFE TRANSFAC yes 132004254 4946 5785134
chr3 132009200 132009204 SRF TRANSFAC yes 132004254 4946 5785135
chr3 132009210 132009218 NR4A2 JASPAR yes 132004254 4956 5785136
chr3 132009236 132009246 SP1 JASPAR yes 132004254 4982 5785137
chr3 132009240 132009252 YY1 JASPAR yes 132004254 4986 5785138
chr3 132009247 132009251 YY1 TRANSFAC yes 132004254 4993 5785139
SNPs associated with CPNE4[ENSG00000196353.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 131422568 rs143546240 AT A 0 Esophagus 0.000798947 7034455
chr3 131518690 rs1398768 G A 0 Heart 1.94371e-07 7035029
chr3 131430954 rs1546312 A G,T 0 Breast 0.319155 7034574
Details of CPNE4[ENSG00000196353.7]
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Genomic Location chr3:131252399-132004254[-]
TSS 132004254
Gene Name CPNE4
Ensembl ID ENSG00000196353.7
ENTREZID 131034
Uniprot
Q96A23
Q4G168
B7Z370
Protein Name
CPNE4 protein
Copine-4
Expression levels of CPNE4[ENSG00000196353.7]
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