EnhancerDB
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Enhancers that regulate RD3[ENSG00000198570.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 211571354 211575894 enh60206 211666259 90365
Blood (OCI-LY7)
chr1 211586865 211596395 enh906 211666259 69864
Astrocyte Peripheral Blood (MM.1S) Neural Stem Cells (H9) Blood (Karpas-422)
chr1 211590216 211590571 vista4961 211666259 75688
VISTA
chr1 211593638 211593702 vista4962 211666259 72557
VISTA
chr1 211640045 211648319 enh61965 211666259 17940
Esophagus Spleen Pancreas Stomach
chr1 211656681 211660831 enh64162 211666259 5428
Heart
chr1 211662962 211663302 vista4963 211666259 2957
VISTA
chr1 211673165 211677615 enh98605 211666259 6906
Uterus Stomach
chr1 211685199 211707748 enh12631 211666259 18940
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Ovary Blood (OCI-LY7) Placenta Peripheral Blood (MM.1S) Uterus Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9)
chr1 211688648 211688771 vista4964 211666259 22389
VISTA
chr1 211702766 211702975 vista4965 211666259 36507
VISTA
chr1 211712804 211713120 vista4966 211666259 46545
VISTA
chr1 211713164 211718695 enh12632 211666259 46905
Large Intestine Esophagus Placenta Thyroid Lung (PC-9) Pancreas (Panc1) Heart Epithelial (MCF-7)
chr1 211719605 211727444 enh12633 211666259 53346
Bone Marrow (K562) Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Placenta Lung (PC-9) Heart
chr1 211727785 211735615 enh12634 211666259 61526
Bone Marrow (K562) Placenta Large Intestine
chr1 211753366 211753524 vista4967 211666259 87107
VISTA
chr1 211754949 211755173 vista4968 211666259 88690
VISTA
chr1 211760169 211767916 enh27466 211666259 93910
Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Uterus
chr1 211765642 211765767 vista4969 211666259 99383
VISTA
Transcript facotrs that regulate RD3[ENSG00000198570.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 211662979 211662992 POU2F2 JASPAR yes 211666259 3267 118451237
chr1 211662987 211662991 YY1 TRANSFAC yes 211666259 3268 118451238
chr1 211662997 211663001 YY1 TRANSFAC yes 211666259 3258 118451239
chr1 211662999 211663014 STAT1 JASPAR yes 211666259 3245 118451240
chr1 211663001 211663012 STAT1 JASPAR yes 211666259 3247 118451241
chr1 211663001 211663012 STAT3 JASPAR yes 211666259 3247 118451242
chr1 211663007 211663017 HEY2 JASPAR yes 211666259 3242 118451243
chr1 211663042 211663046 LFA1 TRANSFAC yes 211666259 3213 118451244
chr1 211663043 211663058 MEF2C JASPAR yes 211666259 3201 118451245
chr1 211663064 211663078 TLX1 JASPAR yes 211666259 3181 118451246
chr1 211663090 211663096 LEF1 TRANSFAC yes 211666259 3163 118451247
chr1 211663090 211663096 SOX10 JASPAR yes 211666259 3163 118451248
chr1 211663099 211663110 NFKB1 JASPAR yes 211666259 3149 118451249
chr1 211663105 211663111 MZF1 JASPAR yes 211666259 3148 118451250
chr1 211663123 211663127 ESR1 TRANSFAC yes 211666259 3132 118451251
chr1 211663126 211663131 MYC TRANSFAC yes 211666259 3128 118451252
chr1 211663168 211663178 FIGLA JASPAR yes 211666259 3081 118451253
chr1 211663168 211663178 TCF3 JASPAR yes 211666259 3081 118451254
chr1 211663189 211663433 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 211666259 2826 107867331
chr1 211663202 211663208 ZNF354C JASPAR yes 211666259 3051 118451255
chr1 211663207 211663217 MZF1 JASPAR yes 211666259 3042 118451256
chr1 211663210 211663215 TFAP2A TRANSFAC yes 211666259 3044 118451257
chr1 211663210 211663216 MZF1 JASPAR yes 211666259 3043 118451258
chr1 211663211 211663222 NFKB1 JASPAR yes 211666259 3037 118451259
chr1 211663212 211663217 ETS2 TRANSFAC yes 211666259 3042 118451260
chr1 211663230 211663234 NFE TRANSFAC yes 211666259 3025 118451261
chr1 211663241 211663261 PPARG JASPAR yes 211666259 2998 118451262
chr1 211663252 211663588 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 211666259 2671 107867332
chr1 211663259 211663264 SP1 TRANSFAC yes 211666259 2995 118451263
chr1 211663264 211663272 GATA5 JASPAR yes 211666259 2987 118451264
chr1 211663274 211663289 LEF1 JASPAR yes 211666259 2970 118451265
chr1 211663275 211663289 TCF7L2 JASPAR yes 211666259 2970 118451266
chr1 211663281 211663302 ZNF263 JASPAR yes 211666259 2957 118451267
chr1 211663290 211663586 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 211666259 2673 107867333
chr1 211663292 211663299 SPIB JASPAR yes 211666259 2960 118451268
SNPs associated with RD3[ENSG00000198570.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 211697506 rs116433736 C T 31247 Esophagus 0.224586 916606
chr1 210705155 rs79202022 G T 944709 Esophagus 0.267558 912722
chr1 211739755 rs140511630 T C 73496 Breast 0.117304 917144
chr1 212628893 rs397710558 T TA 962634 Uterus 0.253186 922942
chr1 211394847 rs113523274 G A 255017 Lung 0.248722 914809
Details of RD3[ENSG00000198570.5]
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Genomic Location chr1:211649864-211666259[-]
TSS 211666259
Gene Name RD3
Ensembl ID ENSG00000198570.5
ENTREZID 343035
Uniprot
Q7Z3Z2
Protein Name
Alternative protein RD3
Protein RD3
Expression levels of RD3[ENSG00000198570.5]
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