EnhancerDB
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  3. rs112447939[chr12:53960537]
Enhancers that have rs112447939[chr12:53960537]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs112447939[chr12:53960537]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53960518 53960539 IRF1 JASPAR yes 120991783
chr12 53960522 53960542 RREB1 JASPAR yes 120991784
chr12 53960522 53960543 IRF1 JASPAR yes 120991785
chr12 53960523 53960544 IRF1 JASPAR yes 120991786
chr12 53960524 53960539 FOXP1 JASPAR yes 120991787
chr12 53960527 53960541 IRF7 JASPAR yes 120991788
chr12 53960528 53960549 IRF1 JASPAR yes 120991789
chr12 53960529 53960544 FOXP1 JASPAR yes 120991791
chr12 53960529 53960550 IRF1 JASPAR yes 120991792
chr12 53960530 53960545 STAT2 JASPAR yes 120991793
chr12 53960533 53960545 IRF1 JASPAR yes 120991794
chr12 53960534 53960554 RREB1 JASPAR yes 120991795
chr12 53960535 53960541 TCF4 TRANSFAC yes 120991796
chr12 53960535 53960550 FOXP1 JASPAR yes 120991797
chr12 53960535 53960556 IRF1 JASPAR yes 120991798
Genes associated with rs112447939[chr12:53960537], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More