EnhancerDB
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  3. rs11287580[chr1:39622638]
Enhancers that have rs11287580[chr1:39622638]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs11287580[chr1:39622638]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39622632 39622653 IRF1 JASPAR yes 28259828
chr1 39622633 39622654 IRF1 JASPAR yes 28259829
chr1 39622634 39622655 IRF1 JASPAR yes 28259830
chr1 39622635 39622650 FOXP1 JASPAR yes 28259831
chr1 39622637 39622652 FOXP1 JASPAR yes 28259832
chr1 39622637 39622658 IRF1 JASPAR yes 28259833
chr1 39622638 39622653 FOXP1 JASPAR yes 28259834
chr1 39622638 39622659 IRF1 JASPAR yes 28259835
chr1 39622638 39622659 ZNF263 JASPAR yes 28259836
Genes associated with rs11287580[chr1:39622638], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More