EnhancerDB
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  3. rs113165508[chr19:4378055]
Enhancers that have rs113165508[chr19:4378055]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 4365204 4379535 enh4970
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs113165508[chr19:4378055]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 21840937
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 108371003
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 108371004
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 108371005
chr19 4374458 4378122 ZNF143 GTRD no Epithelial (MCF-7) 21841081
chr19 4374458 4378122 ZNF143 GTRD no Epithelial (MCF-7) 108371390
chr19 4374458 4378122 ZNF143 GTRD no Epithelial (MCF-7) 108371391
chr19 4375768 4378389 TCF7L2 GTRD no Colon (HCT116) 21841327
chr19 4375768 4378389 TCF7L2 GTRD no Colon (HCT116) 108371811
chr19 4378048 4378059 FLI1 JASPAR yes 112170193
chr19 4378055 4378064 THAP1 JASPAR yes 112170194
Genes associated with rs113165508[chr19:4378055], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More