EnhancerDB
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  3. rs113352828[chr1:23448515]
Enhancers that have rs113352828[chr1:23448515]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 23435285 23459230 enh11606
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Thyroid Neural Stem Cells (H9) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs113352828[chr1:23448515]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 23448484 23448996 ZNF274 GTRD no Bone Marrow (K562) 107802411
chr1 23448500 23448515 MEF2A JASPAR yes 27415132
chr1 23448503 23448517 FOXF2 JASPAR yes 27415136
chr1 23448503 23448517 ONECUT2 JASPAR yes 27415137
chr1 23448503 23448517 ONECUT3 JASPAR yes 27415138
chr1 23448503 23448518 FOXP1 JASPAR yes 27415139
chr1 23448504 23448519 FOXA1 JASPAR yes 27415140
chr1 23448505 23448516 FOXB1 JASPAR yes 27415141
chr1 23448505 23448516 FOXC1 JASPAR yes 27415142
chr1 23448505 23448517 FOXC2 JASPAR yes 27415143
chr1 23448506 23448518 FOXI1 JASPAR yes 27415144
chr1 23448508 23448522 POU4F1 JASPAR yes 27415145
chr1 23448509 23448520 PHOX2A JASPAR yes 27415146
chr1 23448509 23448520 PROP1 JASPAR yes 27415147
chr1 23448511 23448525 POU4F1 JASPAR yes 27415148
chr1 23448512 23448525 DUXA JASPAR yes 27415149
chr1 23448513 23448524 DUX4 JASPAR yes 27415150
chr1 23448513 23448524 PHOX2A JASPAR yes 27415151
chr1 23448513 23448524 PROP1 JASPAR yes 27415152
chr1 23448513 23448529 POU4F2 JASPAR yes 27415153
chr1 23448513 23448529 POU4F3 JASPAR yes 27415154
chr1 23448514 23448524 PAX3 JASPAR yes 27415155
chr1 23448514 23448524 PAX7 JASPAR yes 27415156
chr1 23448515 23448529 POU4F1 JASPAR yes 27415157
chr1 23448515 23448530 HNF1A JASPAR yes 27415158
Genes associated with rs113352828[chr1:23448515], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 24122089 24127271 - GALE ENSG00000117308.10 24127271 673574 Stomach 0.10134 322