EnhancerDB
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  3. rs11388539[chr12:53953021]
Enhancers that have rs11388539[chr12:53953021]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs11388539[chr12:53953021]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53953002 53953023 IRF1 JASPAR yes 120990602
chr12 53953003 53953024 IRF1 JASPAR yes 120990604
chr12 53953003 53953024 ZNF263 JASPAR yes 120990605
chr12 53953004 53953025 IRF1 JASPAR yes 120990607
chr12 53953005 53953026 IRF1 JASPAR yes 120990608
chr12 53953009 53953024 FOXP1 JASPAR yes 120990609
chr12 53953009 53953024 LEF1 JASPAR yes 120990610
chr12 53953009 53953030 IRF1 JASPAR yes 120990611
chr12 53953011 53953026 FOXP1 JASPAR yes 120990612
chr12 53953016 53953031 FOXP1 JASPAR yes 120990613
Genes associated with rs11388539[chr12:53953021], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More