EnhancerDB
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  3. rs11428668[chr1:19729554]
Enhancers that have rs11428668[chr1:19729554]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19711685 19745775 enh98
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs11428668[chr1:19729554]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19729541 19729555 IRF7 JASPAR yes 27185873
chr1 19729543 19729558 FOXP1 JASPAR yes 27185874
chr1 19729544 19729565 IRF1 JASPAR yes 27185875
chr1 19729545 19729565 RREB1 JASPAR yes 27185876
chr1 19729548 19729563 FOXP1 JASPAR yes 27185877
Genes associated with rs11428668[chr1:19729554], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More