EnhancerDB
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Enhancers that have rs115352378[chr1:171404650]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs115352378[chr1:171404650]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171402799 171405826 ZNF143 GTRD no Epithelial (MCF-7) 21349656
chr1 171402799 171405826 ZNF143 GTRD no Epithelial (MCF-7) 107845400
chr1 171404597 171405826 ZBTB33 GTRD no Lung (A549) 21349689
chr1 171404597 171405826 ZBTB33 GTRD no Lung (A549) 107845401
chr1 171404627 171404986 ZNF274 GTRD no Bone Marrow (K562) 107845402
chr1 171404629 171405736 ZBTB33 GTRD no Lung (A549) 21349690
chr1 171404629 171405736 ZBTB33 GTRD no Lung (A549) 107845403
chr1 171404647 171404655 TBX5 JASPAR yes 33080650
chr1 171404647 171404656 ZEB1 JASPAR yes 33080651
chr1 171404647 171404662 SCRT1 JASPAR yes 33080652
chr1 171404648 171404658 FIGLA JASPAR yes 33080653
chr1 171404648 171404658 ID4 JASPAR yes 33080654
chr1 171404648 171404658 MSC JASPAR yes 33080655
chr1 171404648 171404658 MYF6 JASPAR yes 33080656
chr1 171404648 171404658 TCF3 JASPAR yes 33080657
chr1 171404648 171404658 TCF4 JASPAR yes 33080658
chr1 171404649 171404658 SNAI2 JASPAR yes 33080659
chr1 171404649 171404662 SCRT2 JASPAR yes 33080660
chr1 171404650 171404655 USF2 TRANSFAC yes 33080661
chr1 171404650 171404671 MAFG JASPAR yes 33080662
Genes associated with rs115352378[chr1:171404650], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More