EnhancerDB
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  3. rs11589517[chr1:19779053]
Enhancers that have rs11589517[chr1:19779053]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19778785 19779174 vista614
VISTA
Transcript factors that have rs11589517[chr1:19779053]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19779047 19779062 TFAP2A JASPAR yes 27192327
chr1 19779047 19779062 TFAP2A JASPAR yes 118243419
chr1 19779049 19779064 TFAP2C JASPAR yes 27192328
chr1 19779049 19779064 TFAP2C JASPAR yes 118243420
chr1 19779050 19779062 TFAP2B JASPAR yes 27192329
chr1 19779050 19779062 TFAP2C JASPAR yes 27192330
chr1 19779050 19779062 TFAP2B JASPAR yes 118243421
chr1 19779050 19779062 TFAP2C JASPAR yes 118243422
Genes associated with rs11589517[chr1:19779053], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More