EnhancerDB
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  3. rs116052229[chr6:11374963]
Enhancers that have rs116052229[chr6:11374963]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 11352354 11376815 enh23022
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Large Intestine Esophagus Astrocyte Blood (GM12878) Stomach Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Neural Stem Cells (H9) Blood (T-cell) Heart
Transcript factors that have rs116052229[chr6:11374963]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 11374501 11375213 NFIC UCSC Txn Factor no Conserved 108538388
chr6 11374501 11375213 NFIC UCSC Txn Factor no Conserved 108538389
chr6 11374538 11375248 NFATC1 UCSC Txn Factor no Conserved 108538391
chr6 11374538 11375248 NFATC1 UCSC Txn Factor no Conserved 108538392
chr6 11374559 11375182 FOXM1 UCSC Txn Factor no Conserved 108538394
chr6 11374559 11375182 FOXM1 UCSC Txn Factor no Conserved 108538395
chr6 11374929 11375166 EBF1 UCSC Txn Factor no Conserved 108538398
chr6 11374931 11375200 RUNX3 UCSC Txn Factor no Conserved 108538399
chr6 11374935 11375171 SPI1 UCSC Txn Factor no Conserved 108538400
chr6 11374962 11374973 DUX4 JASPAR yes 70309030
chr6 11374962 11374973 DUX4 JASPAR yes 99881338
Genes associated with rs116052229[chr6:11374963], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More