EnhancerDB
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  3. rs116125346[chr1:52028139]
Enhancers that have rs116125346[chr1:52028139]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52027839 52037840 enh360
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Heart
Transcript factors that have rs116125346[chr1:52028139]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52028130 52028145 FOXP1 JASPAR yes 28851010
chr1 52028137 52028141 TEAD2 TRANSFAC yes 28851011
chr1 52028137 52028142 TBP TRANSFAC yes 28851012
chr1 52028137 52028143 TMF TRANSFAC yes 28851013
Genes associated with rs116125346[chr1:52028139], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More