EnhancerDB
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  3. rs116171935[chr12:52510470]
Enhancers that have rs116171935[chr12:52510470]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs116171935[chr12:52510470]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52509961 52510617 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546110
chr12 52510332 52510652 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546111
chr12 52510334 52510718 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546112
chr12 52510354 52510624 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546113
chr12 52510367 52510727 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546114
chr12 52510400 52510636 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546115
chr12 52510433 52510677 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546116
chr12 52510433 52510703 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546117
chr12 52510456 52510558 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546118
chr12 52510464 52510474 ELK1 JASPAR yes 120918124
chr12 52510464 52510483 CTCF JASPAR yes 120918125
chr12 52510466 52510476 ELK1 JASPAR yes 120918126
chr12 52510466 52510476 GABPA JASPAR yes 120918127
chr12 52510466 52510477 ELK4 JASPAR yes 120918128
chr12 52510466 52510477 FLI1 JASPAR yes 120918129
chr12 52510468 52510474 ETS1 JASPAR yes 120918130
chr12 52510468 52510474 SPI1 JASPAR yes 120918131
Genes associated with rs116171935[chr12:52510470], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More