EnhancerDB
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  3. rs116219267[chr2:70354790]
Enhancers that have rs116219267[chr2:70354790]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 70317005 70376348 enh5639
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs116219267[chr2:70354790]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 70354780 70354797 ESR1 JASPAR yes 74898487
chr2 70354781 70354796 ESR2 JASPAR yes 74898488
chr2 70354789 70354797 NR4A2 JASPAR yes 74898489
chr2 70354790 70354800 RORA JASPAR yes 74898490
Genes associated with rs116219267[chr2:70354790], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr2 70056774 70108528 + GMCL1 ENSG00000087338.4 70056774 246262 Esophagus 0.300996 2428