EnhancerDB
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  3. rs116313978[chr1:52029234]
Enhancers that have rs116313978[chr1:52029234]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52027839 52037840 enh360
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Heart
Transcript factors that have rs116313978[chr1:52029234]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52029213 52029234 IRF1 JASPAR yes 28851156
chr1 52029221 52029239 MAFF JASPAR yes 28851160
chr1 52029222 52029237 MAFK JASPAR yes 28851161
chr1 52029227 52029237 PAX3 JASPAR yes 28851162
chr1 52029227 52029237 PAX7 JASPAR yes 28851163
chr1 52029229 52029238 VENTX JASPAR yes 28851164
chr1 52029229 52029239 EN2 JASPAR yes 28851165
chr1 52029229 52029239 ESX1 JASPAR yes 28851166
chr1 52029229 52029239 GBX1 JASPAR yes 28851167
chr1 52029229 52029239 GBX2 JASPAR yes 28851168
chr1 52029229 52029239 HESX1 JASPAR yes 28851169
chr1 52029229 52029239 LBX2 JASPAR yes 28851170
chr1 52029229 52029239 LHX2 JASPAR yes 28851171
chr1 52029229 52029239 MIXL1 JASPAR yes 28851172
chr1 52029229 52029239 RAX JASPAR yes 28851173
chr1 52029230 52029238 LHX9 JASPAR yes 28851174
chr1 52029230 52029238 SHOX JASPAR yes 28851175
chr1 52029232 52029240 HOXA5 JASPAR yes 28851176
chr1 52029232 52029250 TP53 JASPAR yes 28851177
Genes associated with rs116313978[chr1:52029234], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More