EnhancerDB
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  3. rs116338080[chr12:109115577]
Enhancers that have rs116338080[chr12:109115577]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109103554 109121615 enh14974
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Skin (Keratinocyte) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116338080[chr12:109115577]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109114819 109117166 ZNF274 GTRD no Liver (HepG2) 108057585
chr12 109115386 109117012 ZNF274 GTRD no Liver (HepG2) 108057586
chr12 109115423 109116993 ZNF274 GTRD no Liver (HepG2) 108057587
chr12 109115455 109116968 ZNF274 GTRD no Liver (HepG2) 108057588
chr12 109115459 109117390 ZNF143 GTRD no Epithelial (MCF-7) 108057589
chr12 109115473 109117020 ZNF274 GTRD no Liver (HepG2) 108057590
chr12 109115530 109116981 ZNF143 GTRD no Epithelial (MCF-7) 108057591
chr12 109115560 109117128 ZNF143 GTRD no Epithelial (MCF-7) 108057592
chr12 109115567 109115579 SRF JASPAR yes 123616610
chr12 109115574 109115590 E2F2 JASPAR yes 123616613
Genes associated with rs116338080[chr12:109115577], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More