EnhancerDB
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  3. rs11641990[chr16:85258569]
Enhancers that have rs11641990[chr16:85258569]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs11641990[chr16:85258569]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85257855 85259434 ZNF143 GTRD no Epithelial (MCF-7) 21721558
chr16 85257967 85260329 TCF7L2 GTRD no Colon (HCT116) 21721559
chr16 85257969 85258965 ZNF143 GTRD no Epithelial (MCF-7) 21721560
chr16 85257974 85258707 ZNF274 GTRD no Bone Marrow (K562) 21721561
chr16 85258061 85259016 ZNF143 GTRD no Epithelial (MCF-7) 21721562
chr16 85258105 85260305 TCF7L2 GTRD no Colon (HCT116) 21721563
chr16 85258107 85260265 TCF7L2 GTRD no Colon (HCT116) 21721564
chr16 85258143 85260208 TCF7L2 GTRD no Colon (HCT116) 21721565
chr16 85258234 85260260 TCF7L2 GTRD no Colon (HCT116) 21721566
chr16 85258422 85259351 ZNF274 GTRD no Bone Marrow (K562) 21721567
chr16 85258436 85259556 TCF7L2 GTRD no Colon (HCT116) 21721568
chr16 85258459 85259019 ZNF274 GTRD no Liver (HepG2) 21721569
chr16 85258507 85258882 ZNF274 GTRD no Bone Marrow (K562) 21721570
chr16 85258540 85258793 ZNF274 GTRD no Bone Marrow (K562) 21721571
chr16 85258542 85258934 ZNF274 GTRD no Bone Marrow (K562) 21721572
chr16 85258565 85258576 HOXC12 JASPAR yes 12035086
chr16 85258566 85258576 HOXC10 JASPAR yes 12035087
chr16 85258566 85258576 HOXD11 JASPAR yes 12035088
chr16 85258566 85258581 MEF2C JASPAR yes 12035089
Genes associated with rs11641990[chr16:85258569], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More