EnhancerDB
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  3. rs116509302[chr1:234625298]
Enhancers that have rs116509302[chr1:234625298]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234620765 234647895 enh990
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116509302[chr1:234625298]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234623930 234625736 ZNF274 GTRD no Bone Marrow (K562) 21393179
chr1 234623930 234625736 ZNF274 GTRD no Bone Marrow (K562) 107879987
chr1 234623930 234625736 ZNF274 GTRD no Bone Marrow (K562) 107879988
chr1 234624018 234625466 ZNF274 GTRD no Bone Marrow (K562) 21393190
chr1 234624018 234625466 ZNF274 GTRD no Bone Marrow (K562) 107879999
chr1 234624058 234625695 ZNF143 GTRD no Epithelial (MCF-7) 21393194
chr1 234624058 234625695 ZNF143 GTRD no Epithelial (MCF-7) 107880003
chr1 234624058 234625695 ZNF143 GTRD no Epithelial (MCF-7) 107880004
chr1 234624262 234625332 ZNF274 GTRD no Bone Marrow (K562) 21393202
chr1 234624358 234625542 AR GTRD no Prostate (PC-3) 21393203
chr1 234624358 234625542 AR GTRD no Prostate (PC-3) 107880005
chr1 234624504 234625387 ZBTB33 GTRD no Brain (SK-N-SH) 21393206
chr1 234624538 234625332 ZNF274 GTRD no Bone Marrow (K562) 21393208
chr1 234625142 234625372 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21393222
chr1 234625146 234625336 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21393223
chr1 234625149 234625409 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21393224
chr1 234625290 234625300 TBX21 JASPAR yes 36277880
chr1 234625290 234625301 TBX2 JASPAR yes 36277881
chr1 234625290 234625303 EOMES JASPAR yes 36277882
chr1 234625291 234625299 MGA JASPAR yes 36277883
chr1 234625291 234625299 TBX15 JASPAR yes 36277884
chr1 234625291 234625299 TBX1 JASPAR yes 36277885
chr1 234625291 234625299 TBX4 JASPAR yes 36277886
chr1 234625291 234625299 TBX5 JASPAR yes 36277887
chr1 234625291 234625301 TBR1 JASPAR yes 36277888
chr1 234625295 234625303 MEIS3 JASPAR yes 36277889
Genes associated with rs116509302[chr1:234625298], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More