EnhancerDB
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  3. rs116541404[chr1:27849222]
Enhancers that have rs116541404[chr1:27849222]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27840205 27858326 enh176
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 27848725 27849287 vista916
VISTA
Transcript factors that have rs116541404[chr1:27849222]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27849029 27849429 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107802582
chr1 27849029 27849429 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107802583
chr1 27849216 27849229 NR2F1 JASPAR yes 27704633
chr1 27849216 27849229 NR2F1 JASPAR yes 118257848
chr1 27849220 27849224 ESR1 TRANSFAC yes 27704634
chr1 27849220 27849224 ESR1 TRANSFAC yes 118257849
Genes associated with rs116541404[chr1:27849222], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More